Array 1 62722-62388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHV010000026.1 Escherichia coli strain SX5G NODE_26_length_71634_cov_135.560113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62721 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 62660 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 62599 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 62538 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 62477 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 62416 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94941-96372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHV010000014.1 Escherichia coli strain SX5G NODE_14_length_113319_cov_140.332359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94941 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 95002 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 95063 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 95124 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 95185 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 95246 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 95307 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 95368 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 95429 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 95490 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 95551 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 95612 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 95673 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 95734 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 95795 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 95856 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 95917 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 95978 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 96039 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 96100 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 96161 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 96222 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 96283 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 96344 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //