Array 1 93419-92597 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWH01000011.1 Escherichia coli strain A398 NODE_4_length_341703_cov_85.4462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93418 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 93357 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 93296 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 93235 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 93174 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 93113 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 93052 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92991 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92930 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92869 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92808 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92747 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92686 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92625 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120095-118968 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWH01000011.1 Escherichia coli strain A398 NODE_4_length_341703_cov_85.4462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120094 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 120033 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 119972 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 119911 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 119850 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 119789 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 119728 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 119667 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 119606 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 119545 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 119484 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 119423 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 119362 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 119301 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 119240 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 119179 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 119118 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 119057 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 118996 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //