Array 1 25867-22366 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXO01000031.1 Raineya orbicola strain SPSPC-11 Contig0031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 25866 30 100.0 34 .............................. TACGCTAAAAAGGTATGGGGTTAGCTTAATTATT 25802 30 100.0 35 .............................. TGTCCGTGTCAAATCAGTTGAGCCATTGTCTTTAT 25737 30 100.0 37 .............................. GATATAATCGGATTTACTCAAAACGGGACGTTTATTG 25670 30 100.0 35 .............................. TTGACAAATTTTGACAAAGTCGTCGGCGGTATTTG 25605 30 100.0 38 .............................. AATGGTATATATAATTTTAGTAAGGACAATTGGCAAAA 25537 30 100.0 34 .............................. GATGTAATCGGATTTACTCAAAACGGGACGTTTA 25473 30 100.0 35 .............................. GACGTTGAAGTTATTGCTTACCTAGTGAAGCAATT 25408 30 100.0 35 .............................. TTTTTTCAAGTCCATATTTTTAATCCCTAAAGGCT 25343 30 100.0 37 .............................. TTTTGGTTATGTTCAACGTCTATTATCTCCAACTTTG 25276 30 100.0 37 .............................. CAACAAAAAGAACTAAACCACGACAAACTTGATTTTA 25209 30 100.0 34 .............................. CTGTTTTCAGTAGGTCAACCGGAAAGTGCAAACG 25145 30 100.0 36 .............................. CGTTAGCGGGGCGAAGGACTTTCACTTGAAATGGGG 25079 30 100.0 36 .............................. GTCCTTTTTTTTGGCATCATTCTCATTGCTCCAATA 25013 30 100.0 34 .............................. TTTTATTTCGTTTTGAATTGATTTGGCTTCTTGG 24949 30 100.0 37 .............................. GTTCTAACCTCTAACACGTAATCTTGCCACGTGCCTT 24882 30 100.0 35 .............................. ATAATATTTCAAATGAAATTTTTCTGCCTTGCCTT 24817 30 100.0 35 .............................. TACTTTTTTTTGCGTAAGCGAAGCAACGCACAAGC 24752 30 100.0 34 .............................. TACATAACTACATCAACCTGTACTACGTATCCTC 24688 30 100.0 36 .............................. ACGAAAGATGCGAATATTGTCGGAATTTTAGAAGCT 24622 30 100.0 34 .............................. TTTACTTGTCTCATCCTAGACACGTCATCTTTGT 24558 30 100.0 35 .............................. CTCTATTTTGTACGTTGATGAGATGAAGTGGTAGG 24493 30 100.0 36 .............................. TAACTTGTTTTTTTATATTTTTTACGTGGAACATTA 24427 30 100.0 39 .............................. TTGACTTGTTTCATATTAGAGACGTCATCTCTATTTTGC 24358 30 100.0 38 .............................. ATTTTTTCAATCGTGTCGTTAATTTCGTAGATGCTTTC 24290 30 100.0 36 .............................. CTTTGAAACGAGGAGTATTTTTTAATTTGTTAAATA 24224 30 100.0 38 .............................. TTTCTCGGATATGAAGAGACATTTGTAGAGTTTTTCTA 24156 30 100.0 40 .............................. GTTATTTTGCAGGCGTCTGTTTTTAACAGAGCGGGGGCAG 24086 30 100.0 36 .............................. CAGAAACAGAAAACGTCGCAGAAACAAATGTGCAAG 24020 30 100.0 40 .............................. ACCCAATGATACAAATGGGATGAGCCATCCCTTTTGAATC 23950 30 100.0 37 .............................. AACGTTTCGGCGTGCAAAAGAGCCGAAACGGCGTTCT 23883 30 100.0 35 .............................. TAAAATATTCATTCTCTATTTTTCTTATGCAAACA 23818 30 100.0 34 .............................. TATTTTTTCTTTTGTGTCCAAAATGCAATCCTCT 23754 30 100.0 36 .............................. CTTTTCTTGCAATTCGTACAAAAGCCAACTCATTTC 23688 30 100.0 38 .............................. AAAAGGCTTAAACGGTGTTTATGCGTTCTTAAAAAAGA 23620 30 100.0 35 .............................. ATTGTGGCAGGTTTTTGGTTTGGGCGAGCGTGGTG 23555 30 100.0 35 .............................. TTAGACGGAAAGTTGGAGGTAGAAACTAACGTGCT 23490 30 100.0 35 .............................. AAATTTTGCCGTCTGCGTTTTGCTTATACTTGTAA 23425 30 100.0 35 .............................. TAGTAAGCGTATTTAATAGCTTCTTTTGTTTTTTG 23360 30 100.0 34 .............................. AAACAAAGCTCTTTACGAGGCTTTACACGGCACA 23296 30 100.0 37 .............................. GCTCTTGCTTAACAATTAGCTCTTGTACTTTTGCGTT 23229 30 100.0 34 .............................. ATTCAAATACGAAAATTAAAAAGCAAAAACGCAT 23165 30 100.0 34 .............................. AAAGTTTGAGAAACGAAAATTCATAGTTACAGTA 23101 30 100.0 37 .............................. ACCAAAAAGAATCGTTGCGCTGTATCAATTTTTTTCT 23034 30 100.0 34 .............................. TCAAATTTTATTGTAGGCATTACACTACTTTGGA 22970 30 100.0 35 .............................. CCGAAAGTCAAAGACAGTTATTTAATAATATTCCA 22905 30 100.0 37 .............................. TTTGCAAAGTCTGTTTTAGTGCTTACCACTTTCTTTG 22838 30 100.0 33 .............................. GAAAATCAATTTTTGTTATTTAGATAAATTCTA 22775 30 100.0 39 .............................. TTCATAATAAGTCGTTTGCCCCTTTATCCTAAATCTGTA 22706 30 100.0 36 .............................. CTCTTAAATGAGAGTTTCCGAGCAGGTAATATGATT 22640 30 100.0 34 .............................. CAGTTTGGAATTTATACAAGTTAAGCCCGTAAAA 22576 30 100.0 36 .............................. GTGGATTTGTGGAGAGGCAGGAGACAGGAGACAGGA 22510 30 90.0 22 .....GG..T.................... GATAGTAGGGAGTAGAGAGTAG Deletion [22459] 22458 30 90.0 32 .............T.....A.....A.... CTATCTACTATCTACTAATTACTATCTACCAA 22396 30 96.7 0 ..C........................... | T [22390] ========== ====== ====== ====== ============================== ======================================== ================== 54 30 99.6 35 CTTTTAATCGTACCATTGTGGAATTGAAAT # Left flank : CCCGAAGTTATCCAAATTAGGGAAAGTCTGGAGGTTATTTTTGATTTTTTGCAGAAAAATGCTACGCCAAACGATTATGTTTTAGTACAGGGCGATTATGGGGCAGTAGTTTTGGTGGTGCAATGGTGTTGGAAAAAAGGGCTAATACCTTTGTATGGCACTACGCAAAGAGTAGCCCAAGAGACACGAGAAGGGGAACACATCAGGGTTGAACGAATTTTTAGACATTGTAGGTTTAGAAAATATGAAAAATTAATAAATCACTGATAATGAGATGCTTAATTATTTGCAAGTCGTCGAACACTGTTCAGAAGTATACTGTGCTTATTTAGTATAGCTAATTTTAGCCCTAAAAATGGCTTAATATCCTGATTTTCAGCGAGTCGTCGATCTCCAGGGAAAATCCTATGATTGGAGATCGACGACTTTTTTGTAAAAATTTTTCAAAAAAAATTTGGAAATTTCATTTCTTTCGCATACCTTTACAACGAAAATAACGC # Right flank : GGAATTAAGAAGCAGGAGAAAAGAAATAGGATAAAGTTGATAAGAAAATACAAAAGTTAAAAGACCATACATAGAAAGTATTAGCCCTCTGAAAGATTTGATAAATCTTACAAGAGTGAAAAAATGACAAACTATCCACTCACTTATACGCAAAATTATTACTTGATTTTACTCCCCCCTCCTTTCCAAGTAGGGACAAAAGGTTCTTTGGTTGTTTTTTGCCATTTTATTCAAAAGTAATATGCCATTGTATTTTGTAACTCCTCTTTAATCATCGCTTGTAGCCTTTCAGGAGCAAGTACCTTTACGTTTTTTCCAAAGCTCAAAAGTTCGCTCACCAAGTCAGGGTTGATAATCAGCTTCAGGCTAATGCAAAATTCCTGTTCAGTATCTATCAAAATTTTTTGCGTGTGATGCAAAGGCTTGCTTTTAAGGTAATGCCCTACCCAAGGCGAAAAAGAAAGTACAATTTTCTCAATTTTCTCATTTGGCAAGCGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 3158-1539 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXO01000040.1 Raineya orbicola strain SPSPC-11 Contig0040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================== ================== 3157 30 100.0 35 .............................. CTTTTTCCTTCGTTCCAGTAAAACTCCCAACGCCA 3092 30 100.0 37 .............................. CTTGCGTAAATTCTAAATATTTCGGGGCAACATTTGG 3025 30 100.0 36 .............................. AAATGCGTGTAAATTGCATAACGAAAGCTGTCGCAA 2959 30 100.0 37 .............................. TTGAATTTTGTTTTTTGTTTCTTTTATTTTGATTTCG 2892 30 100.0 35 .............................. TTACAAAAGGTATCTGCCTTTTATGCACAAGTTGA 2827 30 100.0 38 .............................. GAAAAACAAGAAAAAAACAACAATACAGACACAAAAGA 2759 30 100.0 35 .............................. GGCGAAAAAAAATTGGTAAAAACTGTATTCCTTAT 2694 30 100.0 34 .............................. CTGTTTGAGTGTTTAATACTGCTCACTTTTAGAC 2630 30 100.0 38 .............................. GCCTGTTGCAGGCAATTTCTATTGCTTCGTAAGCTTCA 2562 30 100.0 38 .............................. TAATCATTGAACAATATTTAGAAGTTTAAATAGTTCTT 2494 30 100.0 37 .............................. CTTGAAGTATCAGTTTGCAGGTACACACATAGCACTA 2427 30 100.0 36 .............................. CCGCATACGAACGCAAATTGCAACTGCACTTCTTGC 2361 30 100.0 39 .............................. GCTCCTACTTGGTTCGGCACGGCAGGAAAGCACACGCAA 2292 30 100.0 34 .............................. ATCAATAAAATAATATTTGAAAAGGGAAACTGCA 2228 30 100.0 37 .............................. TTGTAGAGTTTTTCTACAAATGTGCTCTCCATTCTCG 2161 30 100.0 35 .............................. TTTACTTGCTTCATCTTAAAAACGTCCTCTCTATT 2096 30 100.0 37 .............................. CTTCTACAAGAGGGATTATGTAACCTCGCTCTGTGAG 2029 30 100.0 37 .............................. CTCTTTTTCTTATTTTGGCTCTTTTTGGCAACTTGTG 1962 30 100.0 35 .............................. TATTTTACTTTCAGTGTTTAAGTATAAGTCGGGGT 1897 30 100.0 36 .............................. ACCTCAGCGGGGAAGGAATTTCTACAAACAATCCAA 1831 30 100.0 35 .............................. AAGAACGCAGACAAAAACGCAGAAAAGAGCGACAA 1766 30 100.0 35 .............................. TTAGATGATGTTTTAACATCGTTTACTTTTAGACC 1701 30 100.0 102 .............................. TTTGATTTGTAGAGAGACAGGAGGCAGGAGACAGGACACAGGACTTTTAGTCGTACTATTGTATTAAAATCTATCTACTATCTACTAATTACTATCTACCAA 1569 30 93.3 0 ..C..........................G | T [1562] ========== ====== ====== ====== ============================== ====================================================================================================== ================== 24 30 99.7 39 CTTTTAATCGTACCATTGTGGAATTGAAAT # Left flank : TTTCATAGTGTTTTATTTGTTGATCTGGGGAATATTTGGACTTTACAAGATGTGGGTTTTGCAGGAGGAAAATTTAGCAGAGATTTTTACAGGGAACTGGGCGTAGCAACAGGGACAGGATTACGAATGGATTTTACTTTCTTGCTTATTCGTATTGATTTAGGGTTAAGGGTGTTTGACCCCGCCCGACCCGCAGGTACTCGTTTTGTTATGAATGAGGTACGCTTGCGAAATCTTTTTGGAGGAAGCAACTTTGCTCTGATTAACGTAGGCATAGGTTATCCGTTTTAGAGTCGTCGAACACTGTTCAGAAGTATACTGTGCTTATTTAGTATAGCTAATTTTAGCCCTAAAAATGGCTTAATATCCTGATTTTCAGCGAGTCGTCGATCTCCAGGGAAAATCCTATGATTGGAGATCGACGACTTTTTTGTAAAAATTTTTCAAAAAAAATTTGGAAATTTCATTTCTTTCGCATACCTTTACAACGAAAATAACGC # Right flank : AAAAATTGTACATTTGCACGCGAGGGAGAGTTGAAACTCCTTCCTAAAAGAAAAAGCTTTATATTTATTTTTCTTAAAGCAAAAAGAACCAAAATTTCTTAAAGAACTTGTAAAACACCAGGAGGAGATTAACTTACTTTATCGGCAAAATGCTTATTACGAAAATCCGAAAAAGTTAGAATACACTATTCAAAGGCTTTTAGATCCTCGTGAAAATTCTATCAAAATGGTTAAATCCTTTGATTGCTCATCATTATTATATTACAGGTAAAAGGTTAAAGGAAAAGTTTCAGAAAACTTGTTATTGAGGAATAAAAAAGTTGACAACCTTGCTAACTTTTTATTTTTAGAAAATTTTACTTTATCTTTGTAAGGAATTTATGAAAAAATAAGTCCAGAAAGCAAGTTTACAACAAAATACTTTGCAAAATTAAAAGTTTCACAAAGTTTTGTTTTTTTATTTTTTTTGTATTATTGTGTTTTTATATAAATTAGCTCTA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 33787-32530 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXO01000012.1 Raineya orbicola strain SPSPC-11 Contig0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================== ================== 33786 30 100.0 35 .............................. ATTTGGGTGTTTTTGCCCTTAATTTACAAATGTAA 33721 30 100.0 33 .............................. TGGAAAACTCCTAATACTCTCTGAATATAACCT 33658 30 100.0 34 .............................. AACAAGTTATAGAATATTTGCCAAAATCTATCAA 33594 30 100.0 37 .............................. CTTAACTTTTAACTTCTGATTTAACTTCTGATTCGTA 33527 30 100.0 37 .............................. AAAAATTACGCAAGCATTGCAAGTTTCATAACAGATA 33460 30 100.0 34 .............................. AAAACTTTACAAATCACAATGAAACGCAAAACCC 33396 30 100.0 37 .............................. TGTGTAGGTTAAAACACCCTCTAAATATTCCCGCTCG 33329 30 100.0 35 .............................. AACAAGTAAAGTAAGGCAAAGCTTTCTTGAGTATT 33264 30 100.0 37 .............................. AACGTTTGAGAAACATAAAAGAACTCGTACAAAAAGG 33197 30 100.0 35 .............................. ATTGGAACACTGTGCGACAAAAATTTTGATGAAAA 33132 30 100.0 37 .............................. CTAATTGGACATCTCCCTCCCATCCTTCTTCTGCAAG 33065 30 100.0 34 .............................. TCTTTGCTGAGGTTGGAATTAGATGAAGTGATTT 33001 30 100.0 37 .............................. CTGAACCTTGTAAGCTGTTTTGGCAAAAGAAAATTTG 32934 30 100.0 35 .............................. GTAACTGCATAACGTCCGCCGTTTGAGCAATAATC 32869 30 100.0 36 .............................. GTTTCCTCGTCTATTATTGCTCTATCGAGTTTTATT 32803 30 100.0 36 .............................. TCAATTTTGTCAAGTTTTTTTTTGGGTGTAACTAAA 32737 30 100.0 43 .............................. ATTGATTTGTAGAGAGGCAGGAGGCAGGAGACAGGACACAGGA 32664 30 90.0 74 ......G..........A..A......... GATAGTAGGGAGTAACTTTTAATCGTACTATTGTATTGAAATCTCTCTACTCTCTACTAATTACTATCTACTAA 32560 30 96.7 0 ..C........................... | T [32554] ========== ====== ====== ====== ============================== ========================================================================== ================== 19 30 99.3 38 CTTTTAATCGTACCATTGTGGAATTGAAAT # Left flank : AAGTTTTAAGAAAAAAAATTTTAGGATTTTTTTGCAAATATAGTTTTTTGCTCTAATTTTGCAACACTTTTTTGAAAGGAAATGTTTGGTGCGGTAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGTCGGCGGTTCGATTCCGCCCCACACCACAACAGATAACTAAAACTCTAAAACCTCAAAGTTTTAGAGTTTTTTGTTTTTGAAAAAATGAAGTTCAAATTTATTTTGCAAACACCCCAAAAATATAAAACATTGATTATGAGTTTCTTTTTTATTTTGAAGTCGTCGAACACTGTTCAGAAGTATACTATGCTTATTTAGTATAGCTAATTTTAGCCCTAAAAATGGCTTAATATCCTGATTTTCAGCAAGTCGTCGATCTCCAAGGAAAATCCTATGATTGGAGATCGACGACTTTTTTGTAAAAATTTTTCAAAAAAAATTTGGAAATTTCATTTCTTTCGCATACCTTTACAACGAAAATAACGC # Right flank : GTGGTTGAGAGACAGGAAGCAAGAGACAGGAAGCAAGAGACAGGAAGCAAGAGACAGGAAGCAAGAGACAAGAAAAAGAGGGAAGAATTGAAAATAAACAAAATGTAAAAACAAGAAAAGACAAAAACCTGTAAGGGTTGATAATCCTTACAGGTTTTTTTGTGTGAAAGCGTATAAGGGATTTATCTTTCCACTCTCAACTTAAATACTTGGCAATTTCCCGAAGGCAAAGCAATTTTCAAATAATACAAACCATTCACAATTTCTCTGCGAAGACGTATCTGATGAGTACCCCTTTGCAGAATATCACCAAATACATTCATAAGTTCCCAAGAGAAATTTTCTGCTCCTTTCACAAAAACCTCTTCATAAGCAGGATTAGGATAAATCTGCAAGGTTTGAGAACTGAAACTATCTAACGATAACACTACCCCAATATTTTTAGAAGTAATGCTTTCACAACCTTGCAAGCTGGTACTTTTGAGTGTTACTTGGTAATT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //