Array 1 333297-334525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMZ010000001.1 Vibrio metschnikovii strain M14Y.1 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 333297 28 100.0 32 ............................ AATATCGCCGATAGGTAACACACCGCCGAAAA 333357 28 100.0 32 ............................ ATGATTGAAGAATTGGAACAAAACGCGCTAGA 333417 28 100.0 32 ............................ GCCTGCAGCCGCGCGCCAAAATGGGAAACACT 333477 28 100.0 32 ............................ CATCATACCGCCTGATAAGTGCGCTGAAACAT 333537 28 100.0 32 ............................ GTTAAGGTGGATTTTCCAGAATAGTCAATTCC 333597 28 100.0 32 ............................ TGTTACCTTTGGCCGAATACCCAACGCCGTTT 333657 28 100.0 32 ............................ CGAAGGTTGGAACGTAGTCGAATCCATGCCTG 333717 28 100.0 32 ............................ ATGAGGTTTCATCATGTTTATATGATGATGCC 333777 28 100.0 32 ............................ GCGCGCAGAGCCCGAAAAAGAAAAAAAAGAAA 333837 28 100.0 32 ............................ GTAGTGCGGGTTATCATCAAAATCACCTTCTT 333897 28 100.0 32 ............................ AAACTGGTGAAGAGAAAAACGACATACTAGGC 333957 28 100.0 32 ............................ ACGGAGCAGGGCTTCACGTATACGACCGACCG 334017 28 100.0 32 ............................ CAAGTGGGTTCGTTTGTCAGCGTTTGAGTTGG 334077 28 100.0 32 ............................ TTAAGGAAAATCAAGCAATTATGATGGCGGAA 334137 28 100.0 32 ............................ TGAACCGCTGCCCGACCCAACAAATCCAGTTC 334197 28 100.0 32 ............................ TTTCGAGCAAACCAAGCCGCGCAAACACCAAG 334257 28 100.0 32 ............................ GTACCGCGGTGGCAGCTGGGGCAACGCGTCCG 334317 28 100.0 33 ............................ AACAATGAAGGCAGCTTTGTGATGTCGGAAGAT 334378 28 100.0 32 ............................ TGCGGTTTCAAAGTCGCCAGCAGTTAGATTGG 334438 28 100.0 32 ............................ ATCATTTCCATTCTAGCTCGATTGAATTCTGT 334498 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCGGTATTATGGGCCGCTAAATCTGGTCAATCGCTTGCAAAATGCTTAGCCGAACTTGAACAAAACAAGCCAACAGCATTGTGCCGTTTGCCGTTTATTTACCTACATAGCCAGCAAACGAAGCAGCGCTCTCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCGCAAGACGGGGCCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGACAATCAGCATTGGCAACCGTCCCGTATTTTTAAATTGAACGAAAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAAAGGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : ACGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGATTGTTCAATTGCCGCAGTTTATGGGTACTACGCATAGATTCCCGCTTACGCGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAACACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAATGAATTGCATTTTTCTTATTTAGGATGCGACTCTGTGCCCATCAGCGATCGCTATGTCCTATTTCGGATGGCGCTAAATAGTGATCCCCATGCCCGAGTCATTGGCGATGGTTTTCAAATGTTGGCCCAAACGGCGGGGACGGTGAGTCATCCGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 921-1428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMZ010000023.1 Vibrio metschnikovii strain M14Y.1 Scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 921 28 100.0 32 ............................ ATCAGAAACATGTACAAATGGAAACCGCAAGA 981 28 100.0 32 ............................ CATGTTCACTAGCATAAATCCCACGTAACCCA 1041 28 100.0 32 ............................ TTTTTTGTCGACGGGTCTGTCTTAGTGGACTT 1101 28 100.0 32 ............................ AATCGCGCGCAGCCCGTTCAATTCCCCGAACG 1161 28 100.0 32 ............................ CATGCCAGATGACCAAATCTGTGACTTAGCAA 1221 28 100.0 32 ............................ TGTAGGACAGATTCCTGAGCATGAGTACAATC 1281 28 100.0 32 ............................ TGACAAGGGTCGGACTTTTTATGTGGGCCAAC 1341 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 1400 28 89.3 0 ...T.......T.T.............. | A [1423] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATATCGACCCAGGTAAAATTGGTACAGGTGTTGGTCAATCTTTATACGATGAATGTGAGAGTATGCTTCGAAAACTGAAAGCCAGAAAAGTTTCGTTGTGGGCACTTGATAGTAATGCATACGCATTAAATTTCTATATAAAGCAAGGTTTTATAGCCACAGGTGAAATCAATGAAGAATGTGCAAATGACGTTGTTCTAAATGATATCGAGTTGGCCAAGGAGTTATCTGCCTAACAAAGCATTTAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGATTACGATGTTATGCGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGTTACAGTTTCATA # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAGATTCAGTCTAATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTATTCTTTTTGGTGGCTATTGAAAGTTGAACGATGCTTTTGTGTTTTTGTCGGCTTTTGCTCTGATAAATTGTGTGTGCAAAAGGTTCGATTATCGCTGAAAAGTCTCTTTCTTTGGTGTTACTGGTTCATTGATTCCACTGGCTATTTCGCTTCAGCACGTTTGGGATCTCATGAACATCTTACTTGCTGACAGTGTTTGGTTAGCGCAAGTTTATCGATGATTGTGCGCTTTTTTCCGGCTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1569-2196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMZ010000034.1 Vibrio metschnikovii strain M14Y.1 Scaffold34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1569 28 100.0 32 ............................ GTCTACGGCTTTAAGGGTGAGTATAGACGCCC 1629 28 100.0 32 ............................ GGATTGGATAACTCGACTTGGCGCAGACGTAG 1689 28 100.0 32 ............................ AGACGGGCCACTTTGGCTCAGTTGGTTAAATT 1749 28 100.0 32 ............................ CCACAAAAAATAACCAGCCGAAGCAAACATAA 1809 28 100.0 32 ............................ TACTATCAAAAGGGACCACAGTAGATTTCCTG 1869 28 100.0 32 ............................ AGTTGATCCGCTTTATGTCCGGCTGTATCGCT 1929 28 100.0 32 ............................ TTATTTCTTCATTGACTACCTCTGTAGTCGCA 1989 28 100.0 32 ............................ GCTAACGGTATTGAGGCGGTTGCATCAGAACA 2049 28 100.0 32 ............................ ATATGTTGATGAGTCTGAGATTAAAGCAAATG 2109 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 2168 28 89.3 0 ...T.......T.T.............. | A [2191] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTAGTTTCCACGGTCGAGGTTATGGAACAGAATCATTACGAGCTTTAGTCGAATATTCCCGAAAACAGTTTTGCCTAAACAGTTTTTCTGCTGTGGTTACTGAAGGTAATCTGGGTTCGGAAAAAGTGCTAATAAAAAGTGGATTCACATTTCATAGTGTTATTCCTGATGCTTATGGAATTAGTGGTCAAATGTATGCTGATCACATATACATAATGGAAAATATTGTTACATAACAAACGGTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGGTTACGGTGTTATGCGGAAACTTGGTCGTGGCGTTGTCTGCCCCTTAACCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTCAGTCTGATTTAGACGTTTTTGTATTCTAATTTATTGATATTATGAGTTTATTTTTCTTTTTGGTGGCGATTGAAAGTTGAACGATACTTGTGCTTTTTCGGCAACTTTGCCCTGATAAATTGTGTACGCAAAAGGTTCGATTGTCGCTGAAAGGTCTCTTTCTTTGGTGTTGCTTGTTCATTGATTCCACAGGCTATTTCGCTTCAGCATGTTTGGGATCTCATGAACATCTTACTTGCTGAAAGTGTTTGGTTAGCGCAAGTTTATCGATGTTTGTGCGCTTTTGTCCGGCTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 105545-109514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMZ010000011.1 Vibrio metschnikovii strain M14Y.1 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 105545 32 100.0 34 ................................ TTAAAAGTGTTGTCGTAGTTAACTTGGTAAACAC 105611 32 100.0 33 ................................ TGGACCGAAAAGCTTAACGAACCAATTAATATT 105676 32 100.0 34 ................................ TGATAAATATCTTTTATCCATTGGAACATATTAA 105742 32 100.0 33 ................................ CAGATGAAAGAGGCAATTTAGTCGCGGCTAGCT 105807 32 100.0 34 ................................ ATCAGGAATCTTGGTTAGATACTGCATGGCACCA 105873 32 100.0 33 ................................ AGAATAGATGCAAATAGCCCCGCAATGGGGCTT 105938 32 100.0 35 ................................ GAAAGTAACTGGCTTTTGCTTATGCCAGTCTTTTA 106005 32 100.0 34 ................................ ATACCCAACCATAGACGAGCTTGAATCAAAAATT 106071 32 100.0 33 ................................ ATCATCCAGTTCATCATTGCGCTGCTTATAATG 106136 32 100.0 34 ................................ TCTGTAGCAAGAATCAAACGATTCATATTTTCGG 106202 32 100.0 33 ................................ ATAAATTTCACCGGACAATCTGATGTGCGTAAC 106267 32 100.0 34 ................................ ATCAACGCCTGTCAGAGATGGCTATCTAAAAGCA 106333 32 100.0 34 ................................ CGAAAATTTGTGCAAGCAATGGTGTTGTATTTTA 106399 32 100.0 33 ................................ TGCTGCCAAACGCTCAGCCTCAATAGCCGCTTG 106464 32 96.9 33 C............................... TCAAGAATAGCAATAAAGTACGGGAGGGTTTTT 106529 32 100.0 33 ................................ GCCTTGGTGATCGGAATAGCCAGCAATATAAGC 106594 32 100.0 35 ................................ TATATTGATAGATGTTCATCTGTTTAATAATGTTG 106661 32 100.0 34 ................................ GCTGAAGAATATTGCGACTTTGAAGAATCCGATC 106727 32 100.0 35 ................................ ATGAACATCTGTTTAGTGTCGTAACAGCTATAAAG 106794 32 100.0 33 ................................ ATTGTTGGGTTATGAGGGCTGTTCCATGTGTCG 106859 32 100.0 35 ................................ TTGGGATATCAGATAGACAAGTCCGAAACCTTATA 106926 32 100.0 35 ................................ ATATTAACGACAGCAGCAACAACATCACCGTTATC 106993 32 100.0 34 ................................ CCGTGCTCCCTTTCCCAGAGAACGACATGCGCAT 107059 32 100.0 33 ................................ ACATTTAATGAGGGCTTTATGCGTCATCGCAAA 107124 32 100.0 33 ................................ AGTTAACATTATTAAATTCGGCTATCTGTTATG 107189 32 100.0 34 ................................ TAGTTTGGGGTAGCAAGGAAGAGAAGCAAGGATT 107255 32 100.0 34 ................................ AGGAGTCAATGGACGCTGGCGAACAACTCCAGAG 107321 32 100.0 33 ................................ ATATAACCCCCGATGGTTACTTAGTTAAGAGGC 107386 32 100.0 33 ................................ TAAAAATCTAACCTATCAAAGCAGAGGTGATAA 107451 32 100.0 35 ................................ ATGATTGGTCTCGGCGGCGTTCTGTCGTACGTCTT 107518 32 100.0 33 ................................ ACTTGCTGAGATTTCGACAAGTGCAGCGCCCAT 107583 32 100.0 35 ................................ TAGACACAGCAACAGATTACTACATATCTGGCAGC 107650 32 100.0 33 ................................ AACGTTTCAGTTTCAGTCTGAACATCCTTTGGC 107715 32 100.0 33 ................................ ACGGTATGCGCCCCTCGTTTTGTGCTGCTGGTT 107780 32 100.0 35 ................................ ATTAGCGTACATAAATCCCCCTTATTTTTACTTAT 107847 32 100.0 35 ................................ CGGCTGAGTAGGTTCGGTTGGCTCAGTCGGGTTAG 107914 32 100.0 33 ................................ TCTGGCACTGGCTGCGCTGCAATTAAGCTTGAT 107979 32 100.0 34 ................................ TAGCTATATATTAATCAGCGGTAATGATTACGCT 108045 32 100.0 33 ................................ AACGAGCGCTTGATTAGCGCTACAGCATAGTCA 108110 32 100.0 34 ................................ AAGTAACGGGGCCCATTGAAATATCTGATGCATA 108176 32 100.0 33 ................................ TCGTTAATTCGGTACATGCCATTTTCTTTAACT 108241 32 100.0 34 ................................ CGAAAACAAAAGAAAGGACACTCCTTGGGGGGTG 108307 32 100.0 34 ................................ CAAATTATGGGTGCAATGGGTATGCAAGTTAAGA 108373 32 100.0 34 ................................ ACACAATCCAAGTCTCACAAAAATATTTTGATTT 108439 32 100.0 34 ................................ TTCATTGTCTTTTCCATCTATTAAACTCGAACGA 108505 32 100.0 33 ................................ TGGTTGCATTGTCGGTTTTGTGTTGGTTGGGGC 108570 32 100.0 33 ................................ ATCAGAGCCTGTCGAAGCAGCCAGTGGCTTACC 108635 32 100.0 33 ................................ AAGACCGAGCATCTAATCCAGTTCCCGACCGCG 108700 32 100.0 33 ................................ GATGAAGCAGACACGGGAACTGACGCTAATAAA 108765 32 100.0 33 ................................ AAAATAATCAGCGCAAATACTCCGACGCTGTTC 108830 32 100.0 33 ................................ AAAATCACCGAAAGTCGGCACGATGGCCGCTTG 108895 32 100.0 34 ................................ AAGTATCACATGAAAAAGCCCGATGGCGGTTTGA 108961 32 100.0 33 ................................ TTGGTCAATGGATTTCGGATGGCTGCGAATTGA 109026 32 100.0 34 ................................ ATGGCTCAACTTAAAACAGCAACGGGCGGGATTG 109092 32 100.0 33 ................................ TTTGGAAAGACGTTCGGGTCTTTACCTTTCGGT 109157 32 100.0 33 ................................ TATGTGTTTCGCATTTTGCAAATCCGCCTTTTC 109222 32 100.0 33 ................................ TACTTTTCTCCATGTACTGTCTTTTATGTGTTT 109287 32 100.0 33 ................................ AAGTATCACATGAAAAAGCCCGATAGTGGCCTG 109352 32 100.0 34 ................................ TAATTAACGAAGATTGACAGAGGCCATGCCAAAG 109418 32 100.0 33 ................................ ATAATTGAAACGTGGGATGCGTACCATGATGTT 109483 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 61 32 99.9 34 GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTGCGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGTCAGTGATGATGGGCAAAAACGCCTCAGGCAATTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCGATAGATATATTCAGAGATACCCTGATTTTATAATCGCTAGCCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTACATAAGTTCTTTAAAAATAGAGCAAATATTTGTTTTTATAGATTCACACAAAACAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTACACGTGCCTTTCACAATAGGCT # Right flank : CACCATTACTGATAACTCGTATCTTTCTGACAAAAGTCCCACCTCACAAGAACATAGTGAAACTCGACTCGCTTAGGTCGACAGTTTGCTGTTACGGCAGCAAATTACCGGGCTTCACTTAACGCTCAACCATACTTTCTTTAAGCTGTTGCCTTGTATCCGGTTTTAGATAACTCATCATAATAAAACTGAGTAATCCACACAGTAGGGTCGGGACGATGGGATGGATGCCCGCTAAATCAGGTTTTAACCACATTAAACTCGTGTAGGTGGAAAGCCCAACGATCATTGAACTCAATGCGCCTGTCGATGAAGACTTTTTCCAATATAAACCGAGCACCAAAGGCCAGAGAAATACCGCTTGTAAGCCTCCGAGTGCCATTAAGTTAAGCCAGACAATCATCTCCGGTGGATTGGTTGCAGCAAAAAAAACTAACAAAGCAAAAATCATCGTCACCCACAAAGATAAGCGAGTCATCTTACTTTCTGCCTGCGGCTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 1411-662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMZ010000035.1 Vibrio metschnikovii strain M14Y.1 Scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1410 28 100.0 32 ............................ TAGATGAAGGCTTAAAGTCGAAAACTTCTGAT 1350 28 100.0 32 ............................ TGTCATGCTGTAACCAGTCGGGTACACGTCCG 1290 28 100.0 32 ............................ TAAAAAATGCTTGACGATAAAAAGGGACGTTC 1230 28 100.0 32 ............................ CATCTACTAAAAAAGATGAGTTAGCTTGTACC 1170 28 100.0 32 ............................ CACGTGGCGCACCATAGTTAAAACCAAGGACG 1110 28 100.0 32 ............................ GTACTCAGAAGTTAAAACAAAAGAGTCATTGT 1050 28 100.0 32 ............................ TGAAGGACAGGTTTGATTTTGCAAACAACTAA 990 28 100.0 32 ............................ GGTTTATTGTAAATGCACTAGATAACCCTGAG 930 28 100.0 32 ............................ TGATTTGGGCGGTTTAGATACGGCTGAAAAGC 870 28 100.0 32 ............................ GTTTCAGAACACCATGGGCCAACAGTGTTTGG 810 28 100.0 32 ............................ TGCCCAACCAATGTCTAGGTAGTGTAATACAG 750 28 96.4 32 .....A...................... TTGACCCACTCAGTTTTGAGTTTCGGGAGAGG 690 28 100.0 0 ............................ | A [666] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCAGCTACTCATGGTAATGGCATAACGATTGGTTTTAAAGTTAGTAGTCCTGAATTAGTTGATGCATGGCATGCAGCAGGTATAGCGAATGGAGGTATTACTTGTGAGGATCCACCAGGGATCCGAATCAGTGGAGACCGAAAGCTCTATTTAGCTTATTTACGAGATCCTTCAGGTAATAAACTTTGTGCAACCCATTTTTTGTCTACAGAGAGCAAATAACCACGCTATAACAAGGCGTTCAAGAGGGATTCGCAACGCGTAGTATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTACTAATAAATCGAGTGGAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTGTTTTTTACTGCAATGCGGTGAGTTGGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGGCTTTTCATTGAAAATTTGGGGGAACTTTGAGTCAGGAAACATTGGGGATTTGGACCATGCTTGGAACTTGGTTTTCAGGATTGGGGGCATTTAGTGCTGTACTGTTCGTTTTATACTCAAATAAACCCAGGTTGAATATCAAATTTCGTGGGCAGTCTAAGCTAGAAATAGTTAATCAGCGTCCGGTAAATGCGCATATTAGCCATATTTATCATGAAATTTTGGGTGTGCCTAAGTCTCGATTTGCCAATTTCAGCCCTTATAGAATTCTATTGGATCACAGTACAAGGGAAGATGAACCTCTGGATAAAACCGTAGTCTCGGGTGAGTTTTTTATTGTCCACCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //