Array 1 8640-7269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMA01000118.1 Salmonella enterica subsp. enterica serovar Giessen strain 225 NODE_118_length_13883_cov_1.58425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8639 29 100.0 32 ............................. GAATGCCGGAGATTACCGGCTCCCCCCTGTCG 8578 29 100.0 33 ............................. ATTCGAGCCGATTTTGTCACGGGCCATGCCTGC 8516 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 8455 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 8394 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 8333 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 8272 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 8211 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 8150 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 8089 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 8028 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 7967 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 7906 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 7845 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 7784 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 7723 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 7662 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 7601 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 7540 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 7479 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 7418 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 7357 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 7296 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33898-31916 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMA01000024.1 Salmonella enterica subsp. enterica serovar Giessen strain 225 NODE_24_length_43410_cov_1.52739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33897 29 100.0 32 ............................. GCAGCATTATATCCTGTCAATACTGGGTTATT 33836 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 33775 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33714 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33653 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33592 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33531 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33470 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33409 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33348 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33287 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33226 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33165 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33104 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 33043 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32982 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32921 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32860 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32799 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32738 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32677 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32616 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32555 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32494 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32433 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32372 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32311 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32250 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32189 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32128 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32067 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 32006 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31945 29 96.6 0 ............T................ | A [31918] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //