Array 1 940439-940994 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019822.1 Pseudoleptotrichia goodfellowii strain JCM16774 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 940439 30 100.0 36 .............................. TAACTTCTTTACTTAATTTTTTCAAAGCTTTATTTT 940505 30 100.0 36 .............................. CTTCTTCTGTTGCTTTTAAGTAGCTTGCGTCTAAGA 940571 30 100.0 36 .............................. TGAAGAGGACTTCCGCTGGCAATCGACACAGTTGGA 940637 30 100.0 36 .............................. GAAAGATTTGCAATAGCAATGATTGAGCGAGGTTGG 940703 30 100.0 36 .............................. ATATTTTTAGGCAATGAATTGAATATAAAGTGTTCA 940769 30 100.0 35 .............................. TTGTTAGTTTCATTATCTGCTTTGTAAGGACTAAA 940834 30 100.0 37 .............................. ATAAGCACGATCACCTGAGCCTACTCGGTTTCCTACA 940901 30 100.0 34 .............................. TTATTAGTGAAGAATGGGATGTTATTAGAACAAG 940965 30 93.3 0 ................G.........G... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTATTAATCGAGCAGACTGTAATGTAAAT # Left flank : TAAAATATGGTGGTAATATGTATGTGATATTAGTTTATGATATTTCAACAGATGATGATGGTGGGAGAATTTCCAGAAATATTTTTAAGATATGCAAAAGATATCTCACTAACGTTCAAAAATCGGTTTTTGAAGGAGAAATTACTCCTGTTTTATTAAGAAAACTTTATTTGGAATTAAGAGGATTTATCAGAGATGATAAGGATTCCGTATTATTATTTAAAAGTAGGCAGGAAAAATGGTTGGAAAAGGAATTTTGGGGCTTGGAAGATGATAAAACTTCTAATTTTTTTTAAAGTTGTGTTTTAAATCTGTCGATATTCAATAATATAAAAATTACGGGAGTTAGACAGAAAGTTTAAAAATACCGTTTTTCTTGATTTGGATTAAAAAAAGAAAAAGAATAGGATTTTAAAAGTGAGAATTCAGAATAGGAAAAAAATAAGTTCGACAAATTAAATTAAAAATGTTATTATAAATATTATGATATTTTTAGTAAA # Right flank : TTTCTTTATTTGTCAGTCACGACTGACAAATAAATGAGCAATAAATATTATAACTAAAATATATCAGAAAAGAGAGTTTTTGAATAAAATCATGATTCGGAACTCTTTTTTATTTGCAACTATAATCGAAATATATATTATATATAAATAATTTATAAAAAAGAGAGGCAAAAATAATATTCAAAACTATTGCATTATAATTATAAAAATGTTATTATTTTTTAACATAAGATAAAAAATGTATATAATTAAAAATGTAGGACAGTAGGAGGGTAAAAATGAAAAAAATGTTATTATTACTGGGAGCAATCACAGTATTTATTTTAAGTTGCGTAGGAAAAGAAGGACAGTCATCAGGTAAAAAGGAGGAAAGTAAGAAAAAAGTAAAAATCGGAATAATGCAGATTACAACTCATCCGGCATTGGACAGTGCAAGAGAAGGTTTTAAAGAAGCATTTAAAGAAGCCGGTTTAGAAGTAGTTTATGATGAAAAAAATGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAATCGAGCAGACTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1890473-1892154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019822.1 Pseudoleptotrichia goodfellowii strain JCM16774 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1890473 30 100.0 35 .............................. TATTTAGTAGGGATACTTATTCATTCACTTTATAA 1890538 30 100.0 36 .............................. AACATTTTGAAGAAAATAAAATAAGAGTATTTTGCG 1890604 30 100.0 36 .............................. CTACAGGCAAGTGGAGAACATTATATATTACTATAG 1890670 30 100.0 37 .............................. ATATACTCAATCTTGGTTGAATAAATGGTTGATGGGC 1890737 30 100.0 36 .............................. TCAAGGGATTGGGAAAAGTACCTTTTTAGCGAAGTT 1890803 30 100.0 36 .............................. AACAGATATTTTAGCATACTCTATATGTTCAAATAT 1890869 30 100.0 36 .............................. AACAGATATTTTAGCATACTCTATATGTTCAAATAT 1890935 30 100.0 36 .............................. ATCCCAATTAATACGTACCGCTTTTATTCCTGAAAT 1891001 30 100.0 37 .............................. AGTAATCCTGTGGTGGAAGTATTTAATATTAATAAAG 1891068 30 100.0 36 .............................. TGTATTTGTGTATTCGCTTTTAGGCTCAAAGCCACT 1891134 30 100.0 36 .............................. ACAATTTTTAGCAACTGGAAAAGTTGTTTTTGACAC 1891200 30 100.0 36 .............................. GAGGAAAAGGAAGACCTAAAGGAATAGAAAAGCCTG 1891266 30 100.0 36 .............................. CTATCACATATTTTTTACTGTGCATAAATCCTGCAG 1891332 30 100.0 36 .............................. CTTGAAATATGCAACCAAGGTAACAAGATATAAGAA 1891398 30 100.0 36 .............................. ACAAAGAGATAATCTCTTTTTCGCCTTTATTTTCTT 1891464 30 100.0 36 .............................. TATAGCCACTTCATTAAAAGCTATTTTTCTAAAAAC 1891530 30 100.0 36 .............................. AAAATAGTCAAAATCGATACTGTAATTTATTTTTGA 1891596 30 100.0 35 .............................. TGAAATAAAAAGTAAAAAGAAACATACTAAATTGA 1891661 30 100.0 36 .............................. TAATTTCGCTCATAAAGACTTAAATTTTATTGTAAT 1891727 30 100.0 37 .............................. TTTCCAAACTTCTATTAATAGAATGGGAAATTACTGT 1891794 30 100.0 37 .............................. GAAAGAGAAGTTATAAATCATTACCTTAGTTTGGATA 1891861 30 100.0 37 .............................. GAAAGAGAAGTTATAAATCATTACCTTAGTTTGGATA 1891928 30 100.0 36 .............................. AAAGGATCTCCTTCAACTCCTGCACTTTTTTCAAAT 1891994 30 100.0 35 .............................. TGTTGTTGTTACTTTTATTTCTCTTTTAGTTACTT 1892059 30 100.0 36 .............................. ACTCCAAAGTTGATATTGATGAATTAACTAACGAAC 1892125 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 ATTTACATTACACAATGCTCTATTAAAAAC # Left flank : ATCTATTTTATCTATCCATTCTCTTATTTTATCATTTTTAAAATTAGTGCTTTTACATTCTATCACAGCCGCAACAGCTTCAATAGGTATAAATTTTATTTGACCATATTTAAATACATATGGTGTATACTGTTCATCAAATATAGCCAAATCAACTTCATTAGAAAAACTTCCTTCAGAATCCATTATAAAAACCGAACGCTCCACTTTAAACTTTTTAGGAACTATTCTTTCAAAAAAGGACTTCCAAATTTCTTCTCTGAATCCTCCAATTGTAGTTGAATGTTCTATTTGAAAGTTCAATTGGTTTATTAATTCTTTTTCATACATTACATAATTTTTAATAATATTTTCTATATTTTTCTTATTGTCATCTATCATATTTTTTCACTCCTTTTTATTTTTCAATTAAATTATATCTCATTTTTATTAAAAATCAAGTTTTTCATTAAAATTAATTACTACTCTCTGCCTCCTTGTTATTTTATATTTATCCAATT # Right flank : CCTTATTTAAACTTTTACACTAACTATAATAGCAGATTTCTTCAAATTTGTCGATAAAAATTTTTTGATACTTTTATTTTATTTTTTCTTAAAAACTTTTATTACGTAATCTATCTTTTTCTTCTAAAAACAAGGCTTTTAGAATTTCTGTCGGTGTACAGTCTTTTTTCAATTATTCATAATCGACAGATTTTTTTAACTTTATCTCTTTTTCCTCTTCCTAAACTCCCAAGGAGTAACATAGTCTTTTTTAGCAAACAGCCCTATTCTGCTTTTTTGAGCACTTTCCTGATACTGTTTCATTTTTAGGTTTTTCCTGTCATACTGTTCATACCACCAGGCATTTCCGGTTTTTACCATTTTTTCATTTATATTTTCATTATTGAGATAAACAACTCCGATTAGTCTTCCGTATCTGTCTTTTTTCTTTCCTTCTATTTTCACATCTTTATTTTTTATAAAATTCATCAATGCCTGTTTACTTTCATATCCATAATCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTACACAATGCTCTATTAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //