Array 1 34-181 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERJ01000032.1 Moraxella catarrhalis BC8 ctg00037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34 28 100.0 32 ............................ TTAAGTCCCATTTGTCATCGAGCATCATTGAT 94 28 100.0 32 ............................ GCCATCGCTTATGAGCAGACAAGAAGCGACCC 154 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGATCAGCTTTCGTAGTGATTTGTTCAGACAGCC # Right flank : AATGATGGCGAAAACTGGACAATCATTGATGCTTCACGACCGCACAGGTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33-1040 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERJ01000008.1 Moraxella catarrhalis BC8 ctg00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 93 28 100.0 31 ............................ ATATAAGTTATCATCAACTGTGTGTAGCTTT 152 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 212 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 272 28 100.0 31 ............................ ACTCACTACAAAATACTTCGCTTTATGCTGT 331 28 100.0 31 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTCTC 390 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 450 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 510 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 570 23 82.1 0 .......................----- - Deletion [588] 593 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 653 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 713 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 773 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 833 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 893 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 953 28 96.4 32 ..........A................. AAGCGATTAATCCGCTCACCAATTGTTCTGTT 1013 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GCTGATGTTGCTTTCAATCGTGCCAATTTTGCC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 153638-154207 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERJ01000006.1 Moraxella catarrhalis BC8 ctg00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153638 28 100.0 32 ............................ TATTTAGCTGATTAATCCGCTCACCAATCGTT 153698 28 100.0 33 ............................ AAACAACCTTAAACGGACAGACAGCGAGCATTC 153759 28 100.0 32 ............................ TTTGATGGCACACAGGATATTACTTTACCTAC 153819 28 100.0 33 ............................ TCAAAAGTAACCTCAATTTGTGGTACACCACGA 153880 28 100.0 31 ............................ GCCCGAATATTCGGGGCAGTGATTTGGGTAT 153939 28 100.0 33 ............................ TCATTATTACCACCTGTACCAACATTCCATTCA 154000 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 154060 28 100.0 32 ............................ TCTTGGGACTTCTGATAAGGCGTTCTTGACGC 154120 28 100.0 32 ............................ GCAATAGCTTAGATTTTCTCCTTGAAATTAAA 154180 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTAGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : GTTATTTCAAAGTGATGAAACTAGCAGGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //