Array 1 40133-37666 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXE01000015.1 Uruburuella suis strain DSM 17474 Ga0310504_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 40132 36 100.0 32 .................................... TTTAATCTTACCTCAGACGGAGTTAGTTTTCT 40064 36 100.0 35 .................................... GAATAGCGGCTTTTTTGATGGAGTAGAGCCAATGC 39993 36 100.0 33 .................................... CAAAAAGCTCACCGGCGCCAATCTTTTTCAGGT 39924 36 100.0 31 .................................... GCAAAATCACCGCCACCAGCACCGACGTGGC 39857 36 100.0 33 .................................... TGGCATTTGCGCCAATATTGGGCGGTGGCATGC 39788 36 100.0 35 .................................... ACAAGATTTGTGCGACAAAAGAGAAACCGCATGGG 39717 36 100.0 33 .................................... GCAAAAACAATATGATGAAGATAAAAAATACCG 39648 36 100.0 33 .................................... CCTCGATGCGCGCGCGATAGGCAAGTGCATCGG 39579 36 100.0 34 .................................... TTTAAAACCAACCGTTAAAGAAGGGAATATAAAA 39509 36 100.0 33 .................................... GATAGGGCATAGCCTGCCATTCAGACGGCCTGC 39440 36 100.0 32 .................................... GCAACACAGGCCACTATTCGGCGGCCAGCAAC 39372 36 100.0 34 .................................... TCGTCGGCACCCAAAACATAGCCGGGCTTCGGGT 39302 36 100.0 36 .................................... AGAAAATGGAATCAGTAAGTGCTGCTAAAGAATTAC 39230 36 100.0 34 .................................... GGTAACTTTGGACGGTAGCAGCATCAACCACTAC 39160 36 100.0 34 .................................... CCTACTGGGATACGGGTGAGGACGGGTATGATGT 39090 36 100.0 32 .................................... AAAAGAATATGGCGTTAAAGAAAACCAAATGC 39022 36 100.0 33 .................................... GCAAGCACACGAGCAGGCCAAGGGGCTTGATGC 38953 36 100.0 33 .................................... GTGAATCAACGGGAAAATACAACAATCCGCGCA 38884 36 100.0 34 .................................... GTCGCGCTTTAGGCCAATCGTAGACATCTTGATA 38814 36 100.0 33 .................................... CTATACCGACAGGATCTTAGAAGTAACTTTGGA 38745 36 100.0 33 .................................... CAGGAGCTAGCGCTGGAGGGTTTGACGCTCTAT 38676 36 100.0 32 .................................... GCCGAGATGTACATCAATGGAGAGCCCGTGAC 38608 36 100.0 34 .................................... CTACAGCCGCTAAGGCAGCGCCTAAAGCGCCTAA 38538 36 100.0 35 .................................... TTACGCGTATTCGTGTGACCGTCACGGCCACATTT 38467 36 100.0 34 .................................... TTATGACAACATGGAATACCGCCTGAAACCCGAG 38397 36 100.0 34 .................................... CCATAAGAACGTTTCAGTTGAAACGGATGTCACA 38327 36 97.2 33 ......................A............. TGAACGCAAAAAGCAACCCGAAATATTGACCGA 38258 36 100.0 34 .................................... TGAACGCTTGCTGGAGGCTGCGAAGGAAGTACTC 38188 36 100.0 32 .................................... CTTAATTATCGAGTAGAGCCATGAGTAAAACA 38120 36 100.0 34 .................................... TTCATATAGTTATATGGGTGAAGACGGGTATGAT 38050 36 100.0 34 .................................... ATAGGCCGCGCCGCATGAGCAAAACCATCAAAAT 37980 36 100.0 34 .................................... GAAATCGAAGATGCGAAATGGGAATGGCGCAACC 37910 36 100.0 33 .................................... GTATGGCAATGCGCTGGTGTATGACAATGCGCG 37841 36 100.0 35 .................................... CGAAGTGCGACAGAAAGAACGGTAGTCGTGCAGTA 37770 36 100.0 33 .................................... TCCAAGCACTACCTGCCTGAGGGTGTAGCGGAG 37701 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 36 36 99.9 33 GTCTTAATCCCCGATTTGATGGGGCTTTTTTGAATT # Left flank : CAAACGAACCACCTGCAGCCGGTCATTTTTGCCGAGTAAGGCCGGCAGCGTTGCACATAAAGCTGCCAATTCCCGCTCTGTTAACCAACATTCAAACAGCGACTTCTGCCCGCCCACCGCATAGCCGCGCAAAATTTCCCGCACCTGCCGCCGTGAACGGTTGCAGGAAATATCGTAAGCCCATAAATATAAATGCCTTTTCATCGCATCATTTCCTGAAAACCGGCAGCAAATAAACTGCATATCCACGATGATATGGCTTTATTTTGCCGTTCGCCAGCCATACAAATTTGTGAGATAAATGTTATCTGTATCAATTTGCCGGCTTTCTCTTTATCGGTGTTTTCAGGCCGTCTGAAAAAATAAAACATTAAAAACAAACAATTAAGTTCTAAATATTTCAGGCAGTTTGTTATTTCTTATAGAAGCGGCAATTAAAACTTGAACATTTTTAAAATTTAAGAATTTTAACCGGGCTGGCAGAAGAAACCGCCGCCCGA # Right flank : AGCAGGGCGTGGTTTTGTTTAGATTAATCAAAAGGTTGAAAATGCTGTTTCCGGACTTTTCTGTCTTAATAAAGCTAATCATGATTTAACCATCGCTTAACTGATAACGGCCGAGGCCGAATACGGTTTCTTTGCCGATGTGCAGCCATTGGCCGATATGCAGCAATTGGGCGAATTCTAGCGGCAAATGGTCAAACCGCCAAGTGCCGGTGATGCCGCCGAGGGTTATGGCTTGTTGTTGGCGGTTGGAATAGCGGCTCCAGTCGCGCCATTGTAATTCGCCGGTGGCGCTGACTGTGGCGGCTGCGCGGCTCAGGTGCGGGAAATCGGCATTGAGCGGCTGTGCCCAGTGTTCGGTGGCGATGGCGGAGGTGCGCCGCATGAGTTGGCGCAGAAGGATGTCGGCGCTGATGCGGTGTATGCCCAATACGCTGTTTTTGCTTTGCAGGCGCATGGGGGTGCGGATATGCAGGGTGGCTGCGGTGGGATAGCGTTCGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCCGATTTGATGGGGCTTTTTTGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 29324-30479 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXE01000001.1 Uruburuella suis strain DSM 17474 Ga0310504_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 29324 33 97.0 34 A................................ GGGTCTAGCGTCATTTCTTCCGCCTGCTGCTGCA 29391 33 97.0 33 A................................ ATTTTCCAAGACAAAGAGGGTGTCGAAGTATTG 29457 33 97.0 31 C................................ AACAACTTTCTTAACCCTTTCAATACCCCCA 29521 33 97.0 32 T................................ TGAAAACGTACCTAGCTTGCCCTCAATCCCCA 29586 33 100.0 33 ................................. TCAAACCCTACCTGTACTTCTCGTGTCAGTTCT 29652 33 97.0 34 T................................ TGTCATACCGCCTTTGAACCCTCCTGTACTAAAC 29719 33 97.0 34 A................................ AGACTGTAGTGCACATCATAGTTCTCATACGAGG 29786 33 97.0 34 T................................ TTAGCGGAAGGTGATTCTGCTGCTGCGACCATCA 29853 33 97.0 32 A................................ TTTATAGACTGGTTCAATTTGATACAGATCAA 29918 33 97.0 33 C................................ TGTTGATTGAGCAATTGCTTCGGTTTTCAGTTG 29984 33 100.0 33 ................................. GTTTAAGATGTTTCCATTGTATTATGACTCATT 30050 33 97.0 33 C................................ TTTAATATTGTAGTTGTTTGTCTGTATGATGGT 30116 33 100.0 33 ................................. TTCAGACATCTCACCCGAAAAATAGACCACATT 30182 33 100.0 34 ................................. TAGAGTTGTGCGAACAGACTCCTGTTCGAGCGTG 30249 33 100.0 34 ................................. GTCAGAACAATCAGCGCGTGCAACAGACAAGGCT 30316 33 100.0 33 ................................. AGCTGATGAATTCTTAAAAACGACATTGGCATT 30382 33 97.0 33 T................................ CGTCTGATGAATGCGCGAAGCAATGGCTGTACA 30448 32 78.8 0 A.T...........CAT...........-.C.. | ========== ====== ====== ====== ================================= ================================== ================== 18 33 97.0 33 GCCAGCCGCCTTCGGGCGGCTGTGAGTTGAAAC # Left flank : CTGATGCTGATTACCTACGACATCTCCCTAGCCGACCCCGAAGGCCAAACCCGCCTGCGCCGCATCGCCAAACACTGCCTCGACTACGGCGTGCGGGTGCAATATTCCGTATTCGAATGCGACCTCGCGCCCGACCAATGGGTGCAGCTGAAAGCCAAACTGCTGGCCACCTATCAACCCGAAACCGACAGCCTGCGCTTTTACCACCTCGGCAGCAAATGGCGGCGCAAAGTAGAACACCACGGCGCCAAAGCCGCAGTGGATATTTTTAAAGACACCCTGATTATCTGAACTTGTGGCGAATTATCTGAACGGATTGCACGAGCGCTAACCTGTAGTGCTCATCAAAAAGCCCGCAGATCAGCGCGGCTTGATTTCTTTAACAATTTGGAAAAAACCGGCCTTACTTGGCTGTGATATAGTAAGGCCATGTGTCTTCGGTGAAACCTTAGCGAAACAGGGCGATGCAAGCCTTGCGGGCCAAGGGTTTCAGCGGCGGC # Right flank : CCTTATACATCTTCATAGCCACAGCCGCCTGCAAGTGGCTGGGAAATGGTCTGATGTATTTGACGATGTTTGCTTTGGTTGGCCGCTTGGGTTGATTGTTATGCTTGATGCAGTAGTGTGCTCAAGTGCTGCACGATGGCGGCGGCGGTGTCGTGTTTGCTCATTTCGGGTAGGGGGGTGTCGCCGTATGCATCGATAATGGTCACTTGATTACGGCTGCTGCCCATGGCGATTGAGACTTCGTTGGCCACCAGCATGGGGATGCTTTTTTTCAGGCGTTTGGCGCGGGCGTGTTCGAGCACGTTGTGGCTCTCGGCGGCAAAGCCGATGCAAAAAGGGGCATCGGGCAGGGCGGCGACTGAGGCGAGAATGTCGGGGTTTTCGGCCAACTCAATCACGGGTGGGGTGCTGTCAGCGCTTTTTTTGAGCTTTTGTGTGCTGCTGTTGCGCACTTTGTAGTCGGCGATGGCGGCTACGCTGATGAAGATGTCTTGCGTATG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 103116-104154 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXE01000001.1 Uruburuella suis strain DSM 17474 Ga0310504_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 103116 33 97.0 34 A................................ CGCTGCACCGTCTTTATCCGGTTCCGGCTCTTGC 103183 33 100.0 34 ................................. GATTGCTTGAGAACTGGTCTATCCTGTGTTGGCT 103250 33 97.0 33 C................................ AGCCTCTACTGGCGGCCAAATGACCGCCGATAG 103316 33 97.0 35 C................................ GTTTTCACGTTTTTCCATGTTTAAATTCCTTGTCA 103384 33 97.0 34 A................................ CCGTTCTTGAATATGCTCCAAAATATGACGGCCA 103451 33 97.0 35 C................................ GACACAGGGGAGGGATTATGGACTATTTGTGGTTT 103519 33 100.0 35 ................................. GTCTTAGCTCTCTTAAGACCTTTTTCATGTGTCCA 103587 33 97.0 33 A................................ GGGCAGCACTTTGGCGCTGGCGCTCACCGCCTT 103653 33 100.0 33 ................................. GGGCACGGCATCGCCGGCGGTGCCGCGCGGCTT 103719 33 100.0 35 ................................. TGCGCTGATTTCGGGGCGGTGGCGCGGTGACACAT 103787 33 100.0 34 ................................. TTTGAAAACGCTCACCATGGCAACATTTTTAAAA 103854 33 97.0 34 A................................ ATCGCGGCGACAAGGGCAGGATTGCCCAAACCCT 103921 33 97.0 36 C................................ AAACCTGAATCTGTTTGCTCGTGCAGCGTTTTCAAC 103990 33 97.0 33 C................................ GAAAACGCGATGCAGGAAGTGGCCGGCTTGTCG 104056 33 97.0 33 ......................C.......... AATTTCAGCATCTGCCAAAAGTACCACACATTA 104122 33 75.8 0 T........................AAA.GCCG | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 96.6 34 GCCAGCCGCCTTCGGGCGGCTGTGAGTTGAAAC # Left flank : GCTGATGCTGATTACTTACGACATCTCCCTGGCCGACCCCGAAGGCCAAACCCGCCTGCGCCGCATCGCCAAACACTGCCTCGACTACGGCGTGCGCGTACAATATTCCGTATTCGAATGCGACCTCGCGCCCGACCAATGGGTGCAGCTGAAAGCCAAACTGCTGGCCACCTATCAACCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTAGAACACCACGGCGCCAAAGCCGCAGTAGATATTTTTAAAGACACCCTGATTATCTGAACTTGTGGCGAATTATCTGAACGGATTGCACGAGCGCTAACCTGTAGTGCTCATCAAAAAGCCCGCAGATCAGCGAGGCTTGATTTCTTTAACAATTTGGAAAAATCGGCCTTACTTGGCTGTGATATAGTAAGGTCATGTGTCTTCGGTGAAACCTTAGCGAAACAGGGCGATGCAAGCCTTGCGGGCCAAGGGTTTCAGCGGCGGC # Right flank : GTCTGAAAGCATGTTGTGCTTTCAGACGGCCTTTCATTAAATAAAATATGACAAATTATTTATTGCGGCTGAAGATCATTTTGGTTGCTTGCCAAGCCACGCAGCAGGCGCCGCCGATGAAGATCAGGTCGGCGATGGTGCGCACCCAGCGCAAGGTGTCGAGCAGCTCTTGCTGCATAAAGCCTTCGCTGCGGGCATACCACAGGCCTTGTGAAATGCTGGCATGTGCTTGGAATACGCCTATGGGCAAGAGGCTGATTACAATCATCAGGGTGAGGCCGATGTTGAGCAGCCAGAAGCCCCAAGTCATCAGCTTGTCGTCAAAGGCTACGTTGGGGCGGATGTAGCGCGCCACCAAGAGCACGAAGCCTAAGGCGAGGAAGCCATACACACCGAAGAGGGCGGCGTGCGCGTGCACGGCGGTGGTGTTGAGGCCTTGCAGGTAGAAGAGTGAAATCGGCGGGTTGATCAAGAAGCCGAACACGCCGGCGCCGACCATG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //