Array 1 274-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWMZ01000039.1 Klebsiella pneumoniae strain VRCO0389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 212 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 151 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 90 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGTTGAGTGACAGAGAGATTGACCGCCTTGTTT # Right flank : G # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182379-179486 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWMZ01000003.1 Klebsiella pneumoniae strain VRCO0389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182378 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 182317 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 182256 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 182195 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 182134 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182073 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182012 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181951 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181890 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181829 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181768 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181707 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181646 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181585 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181524 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181463 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181402 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181341 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181280 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181219 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 181158 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 181097 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 181036 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180975 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180914 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180853 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180792 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180731 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180670 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180609 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180548 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180487 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180426 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 180365 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 180304 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 180243 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 180182 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 180121 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 180060 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179999 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179938 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179877 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179816 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179755 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179694 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179633 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179572 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179514 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //