Array 1 437919-438746 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UHER01000001.1 Streptococcus agalactiae strain NCTC9993, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    437919	    36	 100.0	    30	....................................	CAGTTTCTAAAGGTGGTCATCCGTCAGCTA	
    437985	    36	 100.0	    30	....................................	ATTGCTAAATTGATTGACAGCTTTTCAAAA	
    438051	    36	 100.0	    30	....................................	GCTGGAGATTTTACAAGCAGTTTGAATTTC	
    438117	    36	 100.0	    30	....................................	ATCACACCAGTCGTTATGATGGATGACTAT	
    438183	    36	 100.0	    30	....................................	TGTCAACAGTACGTGAGACGAGTGTGTAGG	
    438249	    36	  97.2	    30	..............T.....................	TGAAGTTGATGGATATGTTGATTTAGAGCT	
    438315	    36	  97.2	    30	..............T.....................	TAATCATTTTATGAGAGATACCGCCTCAAG	
    438381	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
    438447	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
    438513	    36	  97.2	    30	..............T.....................	AGTTTCTTGTGGGTTAGCTTGTCCACCGTA	
    438579	    36	 100.0	    30	....................................	GAACATGAAAGATTTTAAAAAAGAACATTT	
    438645	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
    438711	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  98.9	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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