Array 1 285665-286409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPCR01000008.1 Listeria monocytogenes strain FSL V1-0009 contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 285665 29 100.0 37 ............................. TCTAAAAATCAAAGGAGGATGTTAGAAATGAATGAAC 285731 29 100.0 35 ............................. TCTGCCGTTTTGATATCATTTTTTGCAATAACATC 285795 29 100.0 36 ............................. GAAGCCTTACTAGTTGAATTATTGCCGCCGGAAGAT 285860 29 100.0 36 ............................. ACGCCTATCTGTGCGTCTTCCCAAACCAAGTCGTGT 285925 29 100.0 36 ............................. AAAAGAGTTGATTGACCAAATCAGAAACACACTCAT 285990 29 100.0 35 ............................. AATTAACAGAAGCGGAAATTAAAGGCATGCAAAAA 286054 29 96.6 37 ................G............ TAGATAGTTTAGACTTTTCGACGTAGTACTTCCGCTA 286120 29 96.6 36 ................G............ GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 286185 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 286249 29 93.1 37 A...............G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 286315 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [286338] 286381 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 94.8 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 302679-304205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPCR01000008.1 Listeria monocytogenes strain FSL V1-0009 contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 302679 29 100.0 34 ............................. CGAGCAATAGACTCTCGAACATCAATACCATACA 302742 29 100.0 36 ............................. AGAAGTTTGCCCCCTGCGCCTAAGAGTTTTCCTAGC 302807 29 100.0 36 ............................. CAATTTGACGAAAGAAACAATGTGAAGTGGTATTCT 302872 29 100.0 36 ............................. CCTAAAGACTTACATCCACTTGTTTTCCAGAGTTAT 302937 29 100.0 39 ............................. TTGCATTAATACTCATTTCTAAGCTTCTAAGTTCATTCA 303005 29 100.0 36 ............................. CAAAATAAATAATATTGAATAAGCTGAAATATTTTT 303070 29 100.0 36 ............................. TTGACACATCAAATGTAAATCCGCTAAACAATTCTT 303135 29 100.0 37 ............................. TCCGACACCACCCAAAAAGCCAATGCAGTGCTTCAAT 303201 29 100.0 34 ............................. GAAGTAGATGTAATAATTTTCAAAGAAGCTTTGA 303264 29 100.0 36 ............................. ACATTTTGTACGCACCACGCTTGACGGTCTGAAACT 303329 29 100.0 35 ............................. AGCTAAACAAGTTCTTGACTGCTCTTCTTAATTCC 303393 29 100.0 37 ............................. GTTATATCTTCTATTTGCGTCGTTTTTCCGTCATAAA 303459 29 100.0 35 ............................. CGAGTTAGGGTTAGCTACTCCCGTTAGTCTTTTTA 303523 29 100.0 37 ............................. ATAATTCTGTGAACAAATACTCTTTTTCCTTTAATAG 303589 29 100.0 36 ............................. ATTTTCGATGGCGGGCATGAAACGACACTAGCTTTT 303654 29 100.0 37 ............................. CAATACCCGCTGGGTTTAGACCTCTAGCAGGTAATCA 303720 29 100.0 34 ............................. GATGGAAGTATTCGTGTGAGTGTTCTGGCATACG 303783 29 100.0 36 ............................. TCAGCTCCATCAATGCTTTTTGATAGCACTTCTAAA 303848 29 100.0 38 ............................. GTACTCCATCGGCAATGATAATCACATCCGAAGTACCG 303915 29 100.0 36 ............................. GAAAATAAAAGAGATCGAAAAACTAAACGAACAAGT 303980 29 100.0 37 ............................. AACCATCTGATGGATCAATGGGGAATGGAGTTTTTAC 304046 29 100.0 36 ............................. TTGTAGTCTGCTAGGTCATCAAACGAATCAATACCA 304111 29 100.0 36 ............................. AAGTTAGTTTCAAGGTGGATCGACTTCTTGAAATGG 304176 29 93.1 0 .......................A....C | C [304199] ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCTGCGAAAAACAATCCCCACGCAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //