Array 1 1359454-1359970 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LN879502.1 Candidatus Protochlamydia naegleriophila strain KNic chromosome cPNK, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1359454	    29	 100.0	    32	.............................	TGTATTCTATCGCCGTTCATTTCGCATTGTCT	
   1359515	    29	  96.6	    32	............................G	TAGGCAGCGTAGGATAATAATCGAATGTACCC	
   1359576	    29	 100.0	    32	.............................	CATTCTTCGGGTGGATTGTACTTAAAGGGGAT	
   1359637	    29	 100.0	    32	.............................	ATTTTTCAACTTCTTTTGCTAATTCACGTGCC	
   1359698	    29	 100.0	    32	.............................	CCTAAGCACTATTCATAAGCCCATATGTATTA	
   1359759	    29	  93.1	    32	......T.....................C	ACACAAAGAGACTTATGACTTGATTTTAAGGT	
   1359820	    29	 100.0	    32	.............................	TAAATAGGCTTCCTTTCAATATTGATAATGAT	
   1359881	    29	  96.6	    32	......A......................	TTGATTTAGAAAAGTATATTGATACTGCTAAT	
   1359942	    29	  93.1	     0	.......................T.G...	|                               	
==========	======	======	======	=============================	================================	==================
         9	    29	  97.7	    32	GTTTCCCCCGTGTATGCGGGGATAGACCT	                                	       

# Left flank :   GTGGCTGATCTGTTTCGCCATAATTTTACCATTCCAATCGCCTTTGAGGCGGTTAAAGAGCTCGAAAGAGGTAACGGTAGCGATATTGATCGTCAAGTGAGAAAACATGCAGGAAAGGTTTTTAAAGAAAAAAAGCTTATTTCTCAGATGATCACTTGTATTAAGGATTTATTGGCTAAAGAAGAGGAAATAAAGTGATCGTTGTTGTTACTCGAGATGTAGCTCCCCGCTTTCGTGGATTCTTGGCTTCATGTATGCTTGAAATAGGGCCTGGCATCTACACCTCTCCAACCATGTCAAAGGGAGTCAGGGATCGAGTTTGGAATGTTTTAGAAGAATGGTTTGATTTATTAGGAGGAGGTTCTATTTTAATGACTTGGAAAGATACTGAGAGTCCTAGCTATCAAGGAATTTTAACGTTGGGTACTCCTCCCGTCTCTATTGTCGCTCATGATGGAATTTATTTGACCCGGCGATAATTTTTTTAAAAATGTTTAAGA
# Right flank :  TGTTAAATATGCAAATGAGCGTTATGAATATACTGAGATCGATTGAGTACCCTTATTCATTAAGCGATGCAGGGGGCTTATTAGCTTTTTATTGGCCTTTACGACTTAGCATAAAATCTAAAAGAAGGTAAAAAACCTTTTCTTCATAAACCATTCCATGCAAAATAGAGGAGTAAAAAATTAAAATGATGCAAAAGTATGAAAAAACTCATTCAAGGAATTGTCGATTTTAGAAAGAACCTGACCGAAGAGAGTAGAACTCTTTTTGCTAAGCTGGCACTTGGACAAAAACCTGACTCCCTTTTTATAGCCTGTTCAGACAGCCGCGTTGTACCCAATCTCTTTGCTTCTACAAACCCAGGAGACTTGTTTGTCTTACGCAATATCGGCAATTTAATCCCTCCTCTTTCGGATTCGGCTCAAGATAGCAGTGCCTCGGCAGTCATTGAATTCTCTCTATTTTCTTTAAATGTTTCTGACATCATCGTTTGCGGCCACTC

# Questionable array : NO	 Score: 3.15
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCCCCCGTGTATGCGGGGATAGACCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-10.60,-8.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.37   Confidence: MEDIUM] 

# Array family : NA
//