Array 1 991136-991835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032237.1 Escherichia coli strain ECCWS199 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 991136 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 991197 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 991258 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 991319 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 991380 29 96.6 32 ...................A......... GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 991441 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 991502 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 991563 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 991624 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 991685 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 991746 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 991807 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1017385-1018511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032237.1 Escherichia coli strain ECCWS199 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1017385 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 1017446 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 1017507 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1017568 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1017629 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1017690 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1017751 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 1017812 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 1017873 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1017934 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 1017995 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 1018056 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 1018117 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1018178 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1018239 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1018300 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 1018361 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1018422 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1018483 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGTCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //