Array 1 284482-286022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLC010000002.1 Moraxella catarrhalis strain AS012766 AS012766_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================= ================== 284482 28 100.0 32 ............................ CACACCCACCACTGTTTGACTTCATGGCGGAC 284542 28 100.0 32 ............................ TGGTTGCTATTATAGGGTATCTTACATTAAAA 284602 28 100.0 32 ............................ TACTGTTTGCAGTTTAACGACTTTGCAGGGGC 284662 28 100.0 32 ............................ CAAAAAAAGAAGTTTCGGTGATTAAGGCCCAT 284722 28 100.0 21 ............................ GCTGGCGGACGGTGTTGATGT Deletion [284771] 284771 28 100.0 32 ............................ ATCTACAAGACCATATATTTCACCCTCTGATA 284831 28 100.0 32 ............................ GCCATCACGAATGGACGATGAATAGCAGTGAT 284891 28 100.0 32 ............................ ATCAGGAAAGTTCGGCTCGCCATTGTCGTTAA 284951 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 285011 28 100.0 32 ............................ TTAGCGTACAGGGGGTATTATTTGGCATGAAT 285071 28 100.0 32 ............................ GGGGTCAAGATTGGGCGTTGGCATTAGCAGAC 285131 28 100.0 32 ............................ TGTTCATCAAGAAAGGTTTTGATGGGCAAGAT 285191 28 100.0 32 ............................ ATCTGATGCTTGCCTAATTGCCGATAAACTCG 285251 28 100.0 32 ............................ TTGCACCAACACCGCTCATGACAATGAGCAAT 285311 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 285371 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 285431 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 285491 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 285551 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 285611 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 285671 28 100.0 55 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTCTTCACGACCGCACAGGTCGCTT 285754 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 285814 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 285874 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 285935 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 285995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================= ================== 26 28 99.9 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTAGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AAAGCTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGGACCTTCACGACCGCACAGGTCGCTTAGAAAAGTTTCAAAATATCAACTTCCCCTAGTAGCTTCTTCACGACCGCACAGGTCGCTTAGAAATCATTATTATCGCCAAAACTCACCCAGTCAAACTTCACGACCGCACAGGTCGCTTAGAAATCTCAAACCCTGCCCCGTTTAGCGTATCAATAATCTTCACGACCGCACAGGTCGCTTAGAAAAAAGGTTTGCATCCCCTTTTGATGGTTTATACTTCACGACCGCACAGGTCGCTTAGAAAAGTTATCGGGCTTGTATTCGCCATTTTCTTTACTTCACGACCGCACAGGTCGCTTAGAAATATCGCAATTTTGTTAAAAATGTGATAACCTTCTTCACGACCGCACAGGTCGCTTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 286136-286824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLC010000002.1 Moraxella catarrhalis strain AS012766 AS012766_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 286136 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 286196 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 286256 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 286318 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 286377 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 286437 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 286497 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 286557 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 286617 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 286677 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 286737 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 286797 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : AAATTATTGGTAGGGTAAGCGAATGTACCAAGCGTCTTCACGACCGCACAGGTCGCTTAGAAAATATTAGATGAAAAGCGATTGGCGGAGTTGGTCTTCACGACCGCACAGGTCGCTTCTTCACGACCGCACAGGTCGCTTAGAAAGTGCTGAATGTGAAAGCATTGCATGGTCGGCTCTTCACGACCGCACAGGTCGCTTAGAAAATCTTTGCACATAGAGACCAAAACCTTATCAACTTCACGACCGCACAGGTCGCTTAGAAATTCAAAATGAGCGCCCAAAATTATTACAAGATTCTTCACGACCGCACAGGTCGCTTAGAAAAGCCACAACACCAAGTGCACCCCAAAGATCATCTTCACGACCGCACAGGTCGCTTAGAAAAAGCTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGGAC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACATTCAATCCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //