Array 1 1726-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOLE010000052.1 Phocaeicola coprocola strain MSK.16.21 NODE_52_length_29365_cov_160.037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1725 29 100.0 36 ............................. ACGCTTTCGTGCTGTGTCGTTTTTTGCTTGTTTTGC 1660 29 100.0 34 ............................. GGCGTATGACAAGTCGTGTGTACTTCTGTTATAC 1597 29 100.0 33 ............................. ATTGCTCTGTCATTATTTTTTGGAAATCTAATT 1535 29 100.0 36 ............................. GAAATTCATCGATTTAGTTCCGGTTTCTGCGAATAT 1470 29 100.0 35 ............................. AGCATTGAGGCGTTTGCTGTTTTTTCTGCAGCGTT 1406 29 100.0 34 ............................. TGCGTTACCCTGACAATAATCAACTCTTGGTGTT 1343 29 100.0 35 ............................. CCGATTGGTAAACCTACTCCTGTTGTGGTCGCTTT 1279 29 100.0 35 ............................. TCATCTGTTTTCTTTATGATAACATGTCCTGCACG 1215 29 100.0 36 ............................. CGGCTTAACAGATTTCTTCTTTCCGTCCTTTTCAAA 1150 29 100.0 36 ............................. AGAACTTTAGCTGTAGTGAGTGTTGTTCCGTCTTTA 1085 29 100.0 34 ............................. ATCTTGAAACGGTTCTGCTTGTGGCTTGTCTGAA 1022 29 100.0 34 ............................. ATCCATATAGTACATTTACCCCAACTTAACATAG 959 29 100.0 36 ............................. TAAATTACCTCCTTTTTAATCGTGTTCAAAAACAAG 894 29 100.0 35 ............................. TCCTTAAAGCATACGAAGCTACGATAGACGGAGAA 830 29 100.0 34 ............................. ATGAAATCTATAATAGAAAATAAATCACGTACAG 767 29 100.0 37 ............................. AAAGCAAAGGCATTGGGGTTCAACACAAAGGAGTTAA 701 29 100.0 34 ............................. ATTTACAGCAGGTTCGTTACTTAATGTAGGAACC 638 29 100.0 34 ............................. GGCAGTGTAGGCTGTGAGTTCCGGTGGATGATGA 575 29 100.0 37 ............................. GAAAAGAGGATATCAGGTCAGGATGAATTTTATCTAG 509 29 100.0 38 ............................. TTGTCTATTAGGTATTTTGGCATTACAGGCAAAAGAAA 442 29 100.0 35 ............................. TGAGAAATATGGCAATCAGCAGGACTTTACCGGAC 378 29 100.0 36 ............................. TAATTTCGTTTTTTCTAAATTTTTACTACAATCTTT 313 29 100.0 36 ............................. TCTAATATGACGAGTTGGAAGAAATCCTTTTTTCTT 248 29 100.0 36 ............................. AATATTTCAGCACACTTTCTTCATATTTCTTCGCCT 183 29 100.0 34 ............................. CTTACGACGAAGCTACCATGCTCGATACCGTTCA 120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 100.0 35 CTTTTAATCGTACCTTATGGAATTGAAAC # Left flank : CCATTTAAAATGTACTGGTAAAGATGTATGTGATTCTAGTATATGATTTTGGGGAGCGGAGAGTCGGTAAGATGCTGAAGTTATGTCGTAGGTATTTGAATTGGATTCAAAATTCTGTATTTGAAGGTGAAATTTCGGAGGTCCGATTAAAGGAGTTATTGATGCAATGTGATGCTTTTATGAAAAAAGAAGAAGATAGTATTATCATATTTAGTGGTTCTTCTCAAAATGCAATGGATAAAGTGATTGTAGGTAAAGAATGTGCTGACTTAGATCTTTTTCTTTAAAAGTGTAGTTGTCGATGAGTTATCATTTTATACATTGTAGAATATAAATTATTCGATTGTTCTTTAACTTGTTGAAACACAGACTTTTATAAGAGTGTCGATGCTTAAGCTTTTTTATAGGATTAAGTATCGACATTCTTTTCTCATATTTTTTATATATTTGCAGTCGGAAAGAGTTTCATTTTCAGTGTATATGAGAAATAGAAATGAAGG # Right flank : CCACGTTGAAAAATTCAGAAAGCCTTGTTTTATATTCGCTGAATTCAACTTGCAAATGCAACAGAATTCTGATTAATAATTTGTTTAAATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 27204-26146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOLE010000058.1 Phocaeicola coprocola strain MSK.16.21 NODE_58_length_27260_cov_160.496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 27203 29 100.0 34 ............................. AGGATAAATTCTTTTCTTCCGGCACTTCCTTTTT 27140 29 100.0 35 ............................. ACGTTACCAGCGTACAGAAGTCCGGTAACTTCGAT 27076 29 100.0 36 ............................. CTGCTACAAAGTATTTTTCCTTCGAAATTTGGCTTT 27011 29 100.0 34 ............................. TTGTTAAGGATATTCGTATAGGTGAATACATGTT 26948 29 100.0 36 ............................. AATAGTATAAGAATAGGAATTCCTCTGCAATTAGAA 26883 29 100.0 35 ............................. CACTTTATTGGTACGTAGTAAGTTCGCATATCTTT 26819 29 100.0 34 ............................. TTTCGCCGGAACTCGATAGGTATGCGGCTTACAC 26756 29 100.0 36 ............................. TATTACCGTTTCACGGTGAAAATCACTTTTTATCAT 26691 29 100.0 37 ............................. TCGTAATAGATATCAACTATTTCTCCAGCTTCCCAAG 26625 29 100.0 35 ............................. ATATGGAAAGAAGATTTAGGCGAGGTAAAGTCAGG 26561 29 100.0 37 ............................. CTTGGAAAAACAGTTTGGAACAGACAGCATGGTACAT 26495 29 100.0 36 ............................. AACATCGAGGCGTCCGCGGATTTTCCTGCGGCGTTT 26430 29 100.0 34 ............................. CGCTTCCAGAACTCAAACGATTTATACCAGTGAA 26367 29 100.0 37 ............................. CGTCGGACGCCGGCCATCCCAATACAAAATCTTCATA 26301 29 100.0 34 ............................. GTAGAACAAACGGCTTGAAAATGAAGTTTCAAAC 26238 29 100.0 35 ............................. TAGGTCATAATTTATAGGTTATCATTCTCAATTCC 26174 29 93.1 0 ...........................TG | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 99.6 35 CTTTTAATCGTACCTTATGGAATTGAAAC # Left flank : TTTTTATTGCTTATTATCCGCACCCAAAAAGTTGCATTTATAAGTTGAACTCAAGT # Right flank : GCATTCATATATGTGTCGTCAAGTCATATGGGGCTTTTATTGTATGGAATTAAAACTTGTAAAGCTGAGTTGTTACTTTATATATTATGATTACCTTATAATGTGATTGATTAACAATAATAAAAGGTTAATCAAAATACCTTATAGAAATAAAATGTCAGATTTTTATGTCCTTTTCTTCAGATAAATACATCTCGGTAGTCCACCAAATTTCAACGCTTGTTTTATATACGTATATCCTAATTTTTCCATGTTACTGCGTGAAAAAGAATTTTCCGGATGGACCGTACACGGTATTGGGTTTTGCTCAGGGCTTCTTCTGCCTGACTTATAAGTAAACGTTGTAGTCCGTAACCTCGGAAGTTGGGATGCACTGCTACCGTATCCATGTGTGCTACACTGCACAACTCTGCTTCAGATAATCCAATGTCGTAACCTAGGTTCTCGGAATTTTTTCCGGGAAAGACGACAATGAATAATCCGGCAGTCTGTCCTGATAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //