Array 1 51360-52974 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHK01000003.1 Lactobacillus sp. ESL0225 Ga0226848_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51360 29 100.0 32 ............................. AATGCTATCGCTGCACCAGACAAGAATAATAG 51421 29 100.0 32 ............................. ACAATTGATTTAAATCACGGAAGCTATGTTTC 51482 29 100.0 32 ............................. CTGATCACCAATGCGTGTTGATGTTTGATTAA 51543 29 100.0 32 ............................. TGTCAGTGTTGCCCGTGGTCAAGGTAAGACTT 51604 29 100.0 32 ............................. ATCCTCTCTGTTTTAATTGAAAGTAAACCCAG 51665 29 100.0 32 ............................. GCCAAAGACCCGTTTTTGTTTACGCCCAGACA 51726 29 96.6 32 ............................C ATCACACGATTATTTTTTAGCGTTGTCCGTCT 51787 29 100.0 32 ............................. ATAAGCCAATTTCATTTCCAATGATTTGGGAT 51848 29 100.0 32 ............................. ACGTCTATAATATCTTGTGTTATTATAATCCG 51909 29 100.0 32 ............................. CTGTTACTTCGCCTGGTGTTTTAAGCGTAAAA 51970 29 100.0 32 ............................. TATTGTTAGTGAACACGGTGTTTTAAGCTGTT 52031 29 100.0 32 ............................. TTTTCGTCCCCGTAGTTTGAAGTTGCAAAACT 52092 29 100.0 32 ............................. ATCGCATCTTATCTTCATACCCTCTGTAGGAA 52153 29 96.6 32 ............................C TAAAGGTCGCTTATTGGCGCCGATTGGAATTA 52214 29 100.0 32 ............................. TATAGTTAGCATATTTACTCATGTCTAAATAC 52275 29 100.0 32 ............................. GATATTTGGGTAATTGACCCAGATCAGCCTAT 52336 29 100.0 32 ............................. TCAGGGCAAAATTGGAGTAACGAAAAAACTCA 52397 29 100.0 32 ............................. GAAAAGAAATTTTAACTACGCTTTAAGTGATT 52458 29 100.0 32 ............................. GAAGCCTCAGAAGCCTCTGGTGGTGCAATTGC 52519 29 100.0 32 ............................. TATCAGTTTGATAATATGAACGGCGAATTTTG 52580 29 100.0 32 ............................. ATCTTTAGATAAACGCCCCCAAGTTTTTTCAT 52641 29 96.6 32 ............................C GGACTATCGAAATTATGAGGATTACCAAGTAA 52702 29 100.0 32 ............................. GTAATCCAAATAAACTATAGCACAACTATTTA 52763 29 100.0 32 ............................. TATAAGGGATATCAGCTATCACTAACTGCGCT 52824 29 100.0 32 ............................. ATAAAGAGGTTTATTGATATGTTACTTGAAGA 52885 29 100.0 32 ............................. GGCTGTCGTACCTTCCTTGTCGGTAATATCAA 52946 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GATAAAAATCAAATTATTTCTATTGGAGCAGTTAAAAAAATTAATGATAAAAAGTATGATAGTTTTTATAGATTAATTAAAGTTGATACTGCGGTGCCAAAGACGATAACTGAATTAACCGACATAACATTAGAATTATTGAAAAAAGAGGGGGTTACTTTAGATAGAGCTCTTAGAGAACTAACTGAGTTTATTAGTTCTGCCACGATTATTGGCTATAATTTACAGTTTGATTTATCCTTTCTCATGTCCGGCTATAGATCTGTAAATTTAAAAGAACCGGATAATGAAACTTTAGATTTATTACCTGTAGTTAAAAAAGCAGAAAAATTTATTGATAATTATCGTTTGGCAACTATTTTAAATTTTTATAATATTAAGAATTCCAAGCCACATAATGCACTATCTGATGCTAAGGCTACGTTGCAGTTGTTATACAAACTAATGGAAAATGGCAATATCAAAGTTTAAAAATAAGGGTATAACAAGGATCTTTTACT # Right flank : TTAACGACTGGGCGCATAGTCATTTTCCGCCCAGTGTTCCCTATGTGTGTGGGTGTTCCAGAAAAATACCTTAAGTCAATTTGAACCTAAGGAAGTGTTCCCCACAACGGTCAAAACGTATTGATGAACTTAGTGGTGTTCAAGGCGACTTGAGTTAGGTTATTGTTGGTAAAAATGTTGCCTAATATGCTCTACAACTTTAGATTAAGTATTTTTTGGGTATGTGCTAGATTTGGTGGTCTAATTCTTGGTTAACGATTTTTTGATTAGTTAATTCAACTGCTAATGCAACACTTTTATTTTTTTGTTGCAGAGCTAAGGTTTGAGCTTATTCAACGGCACGCATAGCCTGCTGGTATTCGTGGACGTTTTTTAATTGATAGGCTAAGCTTGGTTCACGTTCAATGTCATATTTACGTGCTAGTTCAGTTAGACGGCTCGGCTTAACGGTTACTCCCTGCTGTGCGCATTTTGAATGCTCGAACCCAGTTCGTCCATGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39911-41068 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHK01000004.1 Lactobacillus sp. ESL0225 Ga0226848_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39911 36 100.0 30 .................................... AGACGTAAGAAATAATAAATAGAATATATA 39977 36 100.0 30 .................................... AGTCAAATTAACCTTACAGCCCCAACAGTT 40043 36 100.0 30 .................................... TTTTGTAAAACAAAAAAATCTCAAATAATA 40109 36 100.0 30 .................................... TTTACCCAAGCTTGTATCTTTTGTTTTTTC 40175 36 100.0 30 .................................... AAATTAAAAGTTGATTGGGATTAATATAAA 40241 36 100.0 30 .................................... TATGGTTTTTGCAAGGAGTAATAATTATGA 40307 36 100.0 30 .................................... AATGGATTTAGAACAAAAAACGCAAGAATT 40373 36 100.0 30 .................................... TTGTTGGATTTTCAAGTCTTTTAACTGCTT 40439 36 100.0 30 .................................... CTTTTGGCTCAAAATCTAGTGGCATTTATA 40505 36 100.0 30 .................................... CACCTTCTACAGAAAATCTACAAAAGGTTG 40571 36 100.0 30 .................................... GATATGTTTAACTAACAAACCGCTTAGAGC 40637 36 100.0 30 .................................... AATTAGCTAAAGAACAGCATTTGACTTTAG 40703 36 100.0 30 .................................... TCGCCATTTACATCTGCGGTACCTAAGACT 40769 36 100.0 30 .................................... CATTCAATGCTTTAGCTCATCAATACATCA 40835 36 100.0 30 .................................... TAATAAAACAATTAAAGAACAAGCGAGGTA 40901 36 100.0 30 .................................... ACAGCTGTCGATTTACCTTTAAAATGGATT 40967 36 100.0 30 .................................... TGACAGAAGTTGAATTTGCTGGCACACCAC 41033 36 97.2 0 .................A.................. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : AGTGGCGACATAATTAAAAAATATATGTCAAATATCTTGAATAGTTATATTGCTAATATTAATGAAAATAATCGAAACCGAATTTTTACTGCATTACAAAATTTAGAAGTAGCTATTGATGATTCACTAATGCTGGAAGACTTACCATTAATAATTAAGTTTGATGATGATTTGAAAAAACTATTGAAATTTTTTGATTTACATATAGATTATGAAATTACTAAGAGTCCCTATGCTATAATAGAAATGATTTTTAAAATTCATCAATCATGTAACTTGAAATCGATCCCTGTGATGTGTAATTCAACACACTATTTAGAACAGGATCAATTGCTAGAGTTATCAAGTTTAGCCAAGCAAATGAAGATGATGGTAGTTCTTTTAGAGTTTGCTTCCCCAGATTTATTGGTTGTACCTGAGGGTGTGCAATTTTATTATATTGATCAGGATCTAATCGATTTGTACTGACATCTATATTAAAACTTTATTATAAAATATCG # Right flank : CTTGCAATACTTTGATTGTAGTTTAAATAACGTTTTAAATGGTAGTCAGAGCATATTAAAAGAACTCAATTCGCAATGACGGAATTGAGTTTTTTTAACTGATTTTATTTACCTAAAAACTGATTACTTTCAACTTCACGGATAAAGTCGGCCAGGTGCTTGTAATAAACATCTGGATTATCAACCATGTGGTGGTGCCCACCATCTGGCGTAGTTACAAGTTGGGCGTTAGGAATTTCTTTTTGCATAATTTTGGCTGTTGCAATTGGCATTGTTTCATTCTCACCAAAAGTAAGTAAAGTTGGTACTTTAATATTTTTTAATTGCTTTCTAAAGTGCCAGTCTTTCAATTTTCCAGTAATGACAAATTCATTATCGCCTTGAAAAGCATTATAAACAGCACTACCGCCAATATCTTGTAAATGGTAAAGTTTTGATGGCTGCCGCCGATCAACAAAATTAATATTAAGAATATTAACATCTTCTTGGTAACGTTGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //