Array 1 107761-106284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBJ010000002.1 Salmonella enterica strain 260 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107760 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107699 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107637 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107576 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107515 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107454 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107393 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107332 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107271 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107210 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107149 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107088 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107027 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106965 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106862 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106801 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106740 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106679 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106618 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106557 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106496 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106435 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106374 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106313 29 96.6 0 A............................ | A [106286] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125447-123893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBJ010000002.1 Salmonella enterica strain 260 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125446 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125385 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125324 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125263 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125202 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125141 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125080 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125019 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124958 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124897 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124836 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124775 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124714 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124653 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124592 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124531 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124470 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124408 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124347 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124286 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124225 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124164 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124103 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124042 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123981 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123920 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //