Array 1 15796-12898 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITC01000008.1 Cronobacter sakazakii strain MOD1_KW18 CsakKW18_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15795 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 15734 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 15673 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 15612 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 15551 29 100.0 32 ............................. CCTGCCGTTGCGCGCGGGTGGCGGCGCGATAC 15490 29 100.0 32 ............................. TCGGTTTTTATGCCGTAATAGCGCCACTCTAT 15429 29 100.0 32 ............................. CGCGTAGACGGTGCGGGGAGGTGTTCAGTTAC 15368 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 15307 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 15246 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 15185 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 15124 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 15063 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 15002 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 14941 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 14880 29 96.6 32 .....T....................... CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 14819 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 14758 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 14697 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 14636 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 14575 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 14514 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 14453 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 14392 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAGCCGTATGTTTT 14331 29 100.0 32 ............................. GCGGCGGCTGGTGGACTTTGTTCGATAGGTGC 14270 29 100.0 32 ............................. CGGTTGCCGAACTGCTGGCGCTGCGGGAGCGG 14209 29 100.0 32 ............................. CAATTCTCCCGCCGCGGGTATACCGCGGCAAA 14148 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 14087 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 14026 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 13965 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 13904 29 100.0 32 ............................. GCTAGTCAGGTCGTTGCCAGCTTCATGCCCTC 13843 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 13782 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 13721 29 100.0 32 ............................. GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 13660 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 13599 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 13538 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 13477 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 13416 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 13355 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 13294 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 13233 29 96.6 32 .C........................... TTTTCGAAATTGAGCATATTTAACCTATGATT 13172 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 13111 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 13050 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 12988 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 12926 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 352188-350938 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITC01000006.1 Cronobacter sakazakii strain MOD1_KW18 CsakKW18_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 352187 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 352126 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 352065 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 352004 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 351943 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 351882 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 351821 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 351759 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 351698 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 351637 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 351576 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 351515 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 351454 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 351393 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 351332 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 351271 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 351210 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 351149 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 351088 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 351027 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 350966 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 453269-455397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITC01000013.1 Cronobacter sakazakii strain MOD1_KW18 CsakKW18_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 453269 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 453330 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 453390 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 453450 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 453510 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 453570 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 453630 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 453690 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 453750 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 453810 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 453870 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 453930 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 453990 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 454050 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 454110 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 454170 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 454230 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 454290 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 454350 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 454410 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 454470 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 454530 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 454590 28 100.0 32 ............................ TGGCTGAATGCGTAGCTGAACGTTGTTCTCTC 454650 28 100.0 32 ............................ ACGTCAGCAACGGTAATTTCGCTATTTTTAAT 454710 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 454770 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 454830 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 454890 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 454950 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 455010 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 455070 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 455130 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 455190 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 455250 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 455310 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 455370 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 464107-465695 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITC01000013.1 Cronobacter sakazakii strain MOD1_KW18 CsakKW18_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 464107 28 100.0 33 ............................ AGAAACTCGGGGTTGCGCTCTCGGTGAATAACC 464168 28 100.0 32 ............................ TTCCGTGGCGAGGCTTGTTACACCCGGAAACC 464228 28 100.0 32 ............................ TGATGCAGCGCCGTCAGAGCGAGGCGGAACGC 464288 28 100.0 32 ............................ ATGGCTACGACCTGCGCCAGCGCGGACAGTAC 464348 28 100.0 32 ............................ GGAACGGCACTACCCGAGCAAAATGGCGGGAT 464408 28 100.0 32 ............................ GCGTGCTCATCAGACCAGAGCAGGCCACATAT 464468 28 100.0 32 ............................ GTAAGCCGCACCAGCACGGCCTTTTTATCGGA 464528 28 100.0 32 ............................ TGGGTGTGTTTTGACAGGGACGCATTCGAACT 464588 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 464648 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 464708 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 464768 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 464828 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 464888 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 464948 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 465008 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 465068 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 465128 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 465188 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 465248 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 465308 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 465368 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 465428 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 465488 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 465548 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 465608 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 465667 27 92.9 0 ........................-..T | T,G [465687,465690] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //