Array 1 4678-3613 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELK01001525.1 Methylobacterium frigidaeris strain IER25-16 C25805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4677 29 100.0 31 ............................. CGCGCTGATGGCCGGCTTTGAGATCCGCTCC 4617 29 100.0 32 ............................. TCGAGGGCCATGATCTCGTGGGGGCGGAGGCT 4556 29 100.0 32 ............................. GCGGCGATCGAGTGGCGCCGCCGCATGGCGCT 4495 29 100.0 32 ............................. ACAGACAACCGGTGACGGAATGATGGGCACGC 4434 29 100.0 32 ............................. CTGGGGAGCCCTGGATCGATGAGCATATGCGG 4373 29 100.0 32 ............................. GATCTTAGTGAGGCTATAGCCCGGGTTTGGTA 4312 29 100.0 32 ............................. TCGACGTGTGGCGCATGGACGGCACGAAGGCT 4251 29 100.0 32 ............................. CAACCCAACGCATCGGAGGCGACCAACCTGCC 4190 29 100.0 32 ............................. CGGCAATCGCCGAACTGGAGGCCGAGAACGCC 4129 29 100.0 32 ............................. GCGGCCACCGCGTCGTCGAGCGCGCCGACCGC 4068 29 100.0 32 ............................. GCACTGTAACGCTGCGGGTCGATCTCTCCGTG 4007 29 96.6 32 ............................T GCGCGCTGCTCGTCGTGCTGTCGCTGGTCTGC 3946 29 96.6 32 ................T............ TGGCGGGTTCGCAGCGTGCAGCGCGGTCTGCC 3885 29 96.6 32 .................C........... CCATCGGGTACCGGCGCCAGCGCGAGGTTGAG 3824 29 100.0 32 ............................. TGTATCTCCCGAAACGAGCAAATCTCGACAAT 3763 29 96.6 32 ........T.................... GCCCCGAAGGCTCCCAAGGCGCCGGCGGCCCC 3702 29 100.0 32 ............................. AGCTTGGTGCCGAACCGGAACACCGAGGTTGC 3641 28 86.2 0 .....................GC.T-... | C [3622] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GCGCTCGTGAGCGCCGGGCCGGCGCGGGCGGACCTGCGGATGTGCAACATGACCGGCAGCCGCATCGGCATCGCGCTCGGCTACCGGGATTCCGGCGGCTGGGTGACGGAGGGCTGGTGGAACCTCTCGGCCAAGGGCTGCGAGACCTTGCTCAAGGGCGCGCTCGCCGCCCGCTACTACTACGTCTTCGCGGTCGATTACGATCGCGGTGGCGAGTGGAGCGGCCGGTCCCTGATGTGCACCCGCGACCGCGAGTTCACCATCCGCGGCGTCGAGGACTGTTTGGCCCGCGGCTACGACCGCAACGGCTTCTTCGAGGTCGATACGGGCGAGCAGAAGAGCTGGACGATCCAGCTGACGGATCCGGGGCGGGCGGGGCCGTGAGGTGGGGTAGAGCGGTGCGTTTTGGAGCCGGCTGAGGCGCCCGGGAACGGGCGGGGAACGCCGGTGCGTTCTTTGACATCGGGAAATGCCAAGTGCATCAGTCACTTCCAGAAGGA # Right flank : AATCCTCCTGCGTGCAGGCGGGAGGGGTCGGGTCAGCCTTCGAGGTGCTGGCAGAGCCGTTCCCAGCTTCAGTTCATCGAACACGATCGTCATGGATTTTGTAGTCACAAAACCGAGCCGGGAAGAGAGAGGCCGCAGGGCTGGCCGCCTGCCCCTACCCCATCACCCGCAACCGATCCCCAACGCCAAAACGCCAATTGACCCGGGCTCGCCGACCGGCTTTCCGTACGAGCCATCCTCCCCCATCCCTATCCCTCGGACGACACCCCCATGAAGCGCGCCCGCCGCACCAAGATCGTCGCGACCCTCGGCCCGGCCTCCGAGGATCCGGCGGTGATCGAGGCGCTGTTCGCGGCGGGCGCCGACGTGTTCCGCATCAACATGAGCCACCTGCCCCGCGAGCGGCTGAGCGAGCGGGTCGCGACGATCCGGGGCATCGAGCAGAAGCTCAAGCGCCCGATCGCCGTGCTGGTCGACCTGCAGGGGCCGAAGCTCCGGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3111-4664 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELK01001337.1 Methylobacterium frigidaeris strain IER25-16 C25327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3111 29 100.0 32 ............................. CCCCAGAGGCGCGCGACGTCGCCTGTCGAGCG 3172 29 100.0 32 ............................. ACGGAACATCGATCTCTGAAAGCAGCTTGTCC 3233 29 100.0 32 ............................. AGCGGCGTTCACCGCCTCGTCAAGCAGCTGGA 3294 29 100.0 32 ............................. GGCCGAGAGCACTTCCAGGATTTCGGGGTAGG 3355 29 100.0 32 ............................. TCTTGAGGATGGCTTCGGCTATCTGCCCCGTA 3416 29 100.0 32 ............................. CGCTCGGCATGGGGCCGGGCGGGGTCGCCGGC 3477 29 100.0 32 ............................. ACGGCGATCCTGTTGGCGACGGTCGGATGAGC 3538 29 100.0 32 ............................. ACCACCCCCCTCTAGCAAAGGGGGGTGCTTGG 3599 29 100.0 32 ............................. GACGCGCTGACCCCACTGCTGGTCCTTGCCGG 3660 29 100.0 32 ............................. GGAACCGCGCTGGCCATCAGCACCGTCACGGT 3721 29 100.0 32 ............................. GAGGCCGAGCATGGCCGGTGATCGCCTGTCCA 3782 29 100.0 32 ............................. CCCGACATTTTCGCCGCGACTTACGAGCCGGT 3843 29 100.0 32 ............................. AACGGCGACGAATATCGCCCCATGTGGTGGTT 3904 29 100.0 32 ............................. CTGGAGTTCGGCGTCGCCAACCTCGCGATGGG 3965 29 100.0 32 ............................. ATACCAAGAAGATCGACTTTCGCACCCCGATT 4026 29 100.0 32 ............................. GCCGATCGACTGGCTGAGAACGAGGCGCAGCG 4087 29 100.0 32 ............................. CGGATGTGCCCCGGGCTTAACCCCCACCCCCA 4148 29 100.0 32 ............................. CCTGATTGCGTGTGGAACGAGACCTAGCCATT 4209 29 100.0 32 ............................. GCGGTCGAGGTAATCGAGTCGGTTCAGCTTGT 4270 29 100.0 32 ............................. GCGATGGCGTGCCGGCTGTCGGCGCCGAGGGT 4331 29 100.0 32 ............................. ATCTTGATACCCATGGGGCGCTACGTTCTGCA 4392 29 100.0 32 ............................. CTCGCCCGCTTCTCGGCCTGGGCCGGCGTCGC 4453 29 100.0 32 ............................. GCGTGCGGGCGATATGGGCCACGTTCACGGCC 4514 29 100.0 32 ............................. ACGACGGTCGGGGGGTTGGTGACCCCGAACTC 4575 29 100.0 32 ............................. TCGGCCGCCTCGGCGGCGAACCGGCGCTCCAT 4636 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGAGCCGCACGGTCCGCCTCGCCCGGGTCGAGGGCGGTCGGCTGGTGCCCTGGCACCCCGACCCGGAACTCCGGCTGGCCTGGGCCCTCTCCGAGGTCACGGTGGCGTTGCGCAAGCTGCGCGGCCACCTCGCCCCCGTCCCCGGCTGGCACGACGCCGCCGCGGCGGTCCGGGCCGGCTGGAGCCGCTTCGACGATGCGGTGATCCTGCTGCCCCTGGAGCCCGGGCCGGACGGTACCTGGCAGGGCACCCTGGTGGCGGAGGATGGCGGGCCGCTCGTCCTGACCTACGGAACGCGGCTCGGGCTCATGCTCTGAGCCGTGGCGCGCTGAGCTGTGGCGCCCGGAACCTTGGCGATCGGAACCCTGGCGCCCGACGCCGATCCGGGGCATCACTGAGCCCGTCCCGACCGCCGAAACGGGCCGGCGGAACGGAGCAGAAACGCCGGTGCGCTGTTTGACATCGTGAAACGCGAGGCGGATCAACTGCTTCCAGAAGGA # Right flank : ATGTCTTCGGCATCGTCATAGACCCAGGAAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19649-16143 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELK01001669.1 Methylobacterium frigidaeris strain IER25-16 C26179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19648 29 100.0 32 ............................. CCTCGCGCACCCCGGGACGCCTCCTGGCGCCA 19587 29 100.0 32 ............................. TCCGTCAGCGACGAGGACTTCGCCAAGTGGCA 19526 29 100.0 32 ............................. CGAACCACGACGCGCCATCCATGCGGAAGTGG 19465 29 100.0 32 ............................. ATCGCCGGCCAGCTCACCGACGCGCAGCTCGC 19404 29 100.0 32 ............................. ATTGGTCGCCGGACCGAGCGCGCGGCTGAAGA 19343 29 100.0 32 ............................. ATGGACCTCCAGACCGTGAAGATCGGCGACCA 19282 29 100.0 32 ............................. CTAGAAGGCCGACTGTTCGGGGCGCATCGGAT 19221 29 100.0 32 ............................. GCGACCGGCAGGGCGCGATCCGGACGCTCGCG 19160 29 96.6 32 ............................T ACCTCGGCGTGGATCAGGTCGGCCCCAAGGCC 19099 29 100.0 32 ............................. CCCTTATCCCGGATCGCCGCGCGGGCTGCCTT 19038 29 100.0 32 ............................. GCGTTGTTGGCGTCGGCAGCCTCCAGCACATC 18977 29 100.0 32 ............................. CGGATCCGACTCGGCGTCCCGCGCCCGGTTGC 18916 29 100.0 32 ............................. CGGCTGCCGCAGACGGGGACGATCAAGCGGCC 18855 29 100.0 32 ............................. CGCATCGGGCGCCTCGAGGAGCAGGCCGGACA 18794 29 100.0 32 ............................. CCCGCGGAGGGGAGGTTAGAGCTTCCCCTCCC 18733 29 100.0 32 ............................. CCGAGGTGGGCCAGGTGGGGCAGGCCGCTCTC 18672 29 100.0 32 ............................. GCCCCAGACAATAGCCCGCTCTATCTAGGCAA 18611 29 100.0 32 ............................. CGTTCTCCGCGCATTGAGCCCGGCTCGCCCCG 18550 29 100.0 32 ............................. GTCTTCGTGTTACCAGACCCGTCCGTGAAGAT 18489 29 100.0 32 ............................. TACAGGCCCGTCCAGAAGTTGTAAGGCCCGGT 18428 29 100.0 32 ............................. CTCGCCGCCTCTGGTGTGCCGATGATGGCAAA 18367 29 100.0 32 ............................. GATCTCTGGGCGGAGTGGTGCCACACCTCCGA 18306 29 100.0 32 ............................. CCAACGTCGCTCAGGATCTCGCTCATTCTGGC 18245 29 100.0 32 ............................. CCTCAGCCCCATTCCGGGTGGTATATCCGCCA 18184 29 100.0 32 ............................. GTCGGAGGCGCAGTATGACCGGCCTCAAACAG 18123 29 100.0 32 ............................. GCGTACTGGGATGCGACGCCCGAATACGAGAC 18062 29 100.0 32 ............................. TAGAGCACGTCGGGCATCGCGAGGGCCTGCAG 18001 29 100.0 32 ............................. GCGGTGAGGCCGGTGGCCTTCTCCGGATGATG 17940 29 100.0 32 ............................. GGCAAGCGCGAGGCTAACGCCTACTGCGCGGC 17879 29 100.0 32 ............................. GCCAGAATGCCATTGCTACGGTGCTGGAGAGG 17818 29 100.0 32 ............................. TAGTCTTTCCATTCGCTAGCCGTGTACCGGCA 17757 29 100.0 32 ............................. TATCGGCAGGATGCGCGGGTTATGCTCTCCGC 17696 29 100.0 32 ............................. GGCATCCGGCAGGATGTGATCAACCTGGAAGC 17635 29 100.0 32 ............................. GTCATTCGCGCTGCTGATGATCGCTATCACGT 17574 29 100.0 32 ............................. GTATAGCGTGGATCGCCGCCCAATGAGACAAC 17513 29 100.0 32 ............................. GACCAGGAGGACCGGCTCGGCACGCTCATCAT 17452 29 100.0 32 ............................. GCCAAGCGCGCGGCGGAAGCCAAGGCGCGCAA 17391 29 100.0 32 ............................. CTGCAGGCCGCCGAGTGAAGACCGACCACGAC 17330 29 100.0 32 ............................. CCCTTGCTACGATTCTGGATCTGCAACGATGT 17269 29 100.0 32 ............................. CGCTCGGCCTTGATGACGTTGTTCGGGCAGGG 17208 29 100.0 32 ............................. GTCGGCAGGGCCTGTTCGTTACGCTGCCGGAT 17147 29 100.0 32 ............................. CTCGTCGTCTCGCTCTCCACCCCCATCGTCCT 17086 29 100.0 32 ............................. GCGACGCAGTTCAGCTCCCGATAGCGGGCCTC 17025 29 100.0 32 ............................. TTGATACGCATCATCCAGCCGATCACTAATCT 16964 29 100.0 32 ............................. TACCGTCACTATGCCGGTCGCGGCATAGCCGT 16903 29 100.0 32 ............................. GTTCTCGGCCGTTCCGGCTTCGATCGCTGGCG 16842 29 96.6 32 ............................C GCGCCGGACAACGATGCTGCCCCTTCGAACTC 16781 29 100.0 32 ............................. CCGCGATAGCGATTGGGACCGAGACAGAGAAA 16720 29 100.0 32 ............................. CTGTTCGGGACTTCGTGCGACGCGCGGCATCG 16659 29 100.0 32 ............................. GCGCTTGGGCTCCAGTCCAAGTACCTTGACGC 16598 29 100.0 32 ............................. GCATAGGAGAACTGGTCGCCGGCCGGGCCGTC 16537 29 100.0 32 ............................. CGCTCCGGCCCGAGGCGGGCGCGGAGCAAACC 16476 29 100.0 32 ............................. CCGGAGGAGCCGCAGTTCCACGCGACGCGGCA 16415 29 96.6 32 ............................C AAATCGGCTTAAGCGCGGGCTCCCTTGTGTAG 16354 29 96.6 32 ..........................T.. GGCCACGCGAACTCGACTACGCCGGCAATCCT 16293 29 96.6 32 .......................T..... CTGAACTCGTCGCAGCCGACCGCGTAGACCGG 16232 29 96.6 32 ..........................T.. CGGGTGGCCAGGATGTGGAGCGCCTCGTTGAC 16171 29 86.2 0 .............A.........AG...T | ========== ====== ====== ====== ============================= ================================ ================== 58 29 99.4 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CTCCGCCGGCGGACTGCCGCCCCCGGGCGAGCCCGCCGACGCCCAGCCTCCTGCCTTCACCGAGGCGCCGTCCGGCGACGGGGGCCATCGGGGATGAGGGTCTTTGCGCGGATGAGGATCTTGCGCGGATGATGGTCGTGGTGGTCGAGAACGCGCCCCCGCGCCTGCGCGGCCGCCTCGCGGTCTGGCTCGTCGAGGTGCGCGCGGGGGTCTATGTCGGTCACTATTCCCGCCGCACCCGCGAGCGGATCTGGGCCGAGGTGCAGGCCGCCATCGGCGAGGGCAACGGCGTCATCGCCTGGACCGCCCAGACCGACATCGGCTACGCCTTCGACACCTGCGGCCGGAACCGCCGCATGCCGGTCGACCTCGACGGCCTCCCACTGGTCGCTTTCCACCCCGACGAGACGCCGCTCTGACGAGGGGCGGAACGGAGGGGAAACGTCGGTGGGTTCTTTGACATCGTGAAAGCTGAGGCGTACCAGGCACTTCCAGGAAGA # Right flank : TGCCAGCCGCGCCGCCCCCCTGCTACACGGTCGGCCGCACAGATCGATCTAACCAATTGATTTTATTGACGATGATGGCGCCGTCATCCGGCGGACGCCGGAGGCGCGAGGACAGGTGACAGCCCAGACCCCTTCCCCTTCCGCCCCCCCTCGCACCCCCCTGCGCGCCTCGCTCCACCTCGGGCGTGGGCGCGTCGTCGCGCGGGACTTCGCCCGCCTCCGGCTCGAATTCGGGACGCAAGGCCTGCGCCTCGACGTGGCGGATCTCGGGCTTGGCGGGCGCTGGGTGTCCATCGCCTTCAAGGACGAGAACCACGGCGCCTTCAGCCGGGTCGAGCTGAATGCGGTCGTGGACGGGCCGGAGGGGCCGCAGGGCACCAGCCTGTCCGAGCGCGCCTTCGGCCACGGGCGCTTCACCTGGCTCGGGCGGCTGCCCGCCGGCACCACCGCCCTGACGCTCACGCCGATGCTCGGCGAGGCGGGCTTGAGCATCGCCGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //