Array 1 61359-60730 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCQ01000026.1 Bacillus thuringiensis serovar japonensis strain BGSC 4AT1 4AT1_contig000026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 61358 32 100.0 34 ................................ TCACCTCCTTGAAAGAAAACATCAATCCCCAAAC 61292 32 100.0 34 ................................ TATACATTCCATATTGGAATAAGTGAACACACCA 61226 32 100.0 35 ................................ ATTTACAGTGAAATCAATAGACCAAAACGGCGGAG 61159 32 100.0 35 ................................ AATAACACCATGCTTAAACGCCATTACAACAAATA 61092 32 100.0 33 ................................ ATAATAAGTTTATAGATTTATCAGAACAACTAG 61027 32 100.0 34 ................................ ATGAAAAGAGCCACTAGGACGACGGCAATACCGC 60961 32 93.8 35 ...................A.C.......... GATATGATCGCGAGAATTGGAATGCTCATTGGTAA 60894 32 90.6 35 ..........TC..G................. TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 60827 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 60761 32 90.6 0 .......T..............AA........ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGCGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGTGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTAAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : GAAATTACTTGCTGCCTTATCTAAATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAATTAATTGATAGTAATTTAGTGTCTCTGTTGGAGAAAGGGGACCTGTTTGAATTCATAAAGCAACGAGTGTTGATCCAATTGACATTACTAGTATACAGATTACGAAAAGTGTAAATTCTGAGCATGGGAAGGATAAAGTTTTAGATACGATGGGGATGAAGCATCGTGTTGATTTCGGAGTCTATGTTTGTTGGTGGGATCATAATTCAAAACCTGGTTAATACTCCTCTGCAAAAGTACATCGTTTGTTAGAAGCTAAACAAAATATTGAAGAACTAAAAACAATCGATGATTATACTACTATATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTAATGGGATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAGGAGATACTCTATCAACTTATTAAAGGAAAGTCGCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 70408-69719 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCQ01000026.1 Bacillus thuringiensis serovar japonensis strain BGSC 4AT1 4AT1_contig000026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 70407 32 100.0 34 ................................ GATTCCGGGTGGACAACCGGACATGTCTGTACTG 70341 32 100.0 33 ................................ CTCCACGGTTTGCGATACCTAGTGCACCCGCTA 70276 32 100.0 34 ................................ ACAGAATGAGACATTGGGCTGAAGTGATCGGGAA 70210 32 100.0 34 ................................ TACAATGAATTTAAATCAGAACGTTTCCTGGTTG 70144 32 100.0 34 ................................ ACATTGGATAGTTTGCGATATCCGGAAGGCGCTC 70078 32 96.9 34 ...................T............ CTTGAGAGAAGGAAATAGGTGTTGTTATGAAGTC 70012 32 93.8 33 ...........A....A............... ATAGAAGGGCACTTTTAACATCGAACTCTTTAA 69947 32 93.8 33 ...........A.......T............ ATGCCAATCGGTGTACAAGCTGACTTTATTAAC 69882 32 87.5 34 A.T....T..G..................... GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 69816 31 90.6 35 ..........G-........T........... TACCCCGGGTTTATATTTATCTGCAACGCTCTATA 69750 32 90.6 0 ...........A.........CA......... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 95.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACGAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCGAAATAAATGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCGAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGATATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTTGAACATATTGGTGTAAAAGAATGAATTGATTTAGAAAGTCTTTTAATTTTTTAGGTGCGAATGTATAGCGAACATGGAATTCCTAGTACATTCGCACCTAGAATTATCATGCTTTATGATGTGGATTTATGATTTTTATATAAATCCCTTTATTAAATAAAAATATTTATATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTAATGCTCTGGTTTTAAAACACTCTACAGTTTAGTAGATACTCAACTGGAATTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATTAAATGGAGGGAGATTAAATGACCTATATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGGAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGAGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAGGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21125-21815 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCQ01000009.1 Bacillus thuringiensis serovar japonensis strain BGSC 4AT1 4AT1_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21125 30 100.0 36 .............................. ATTGCCTTAACTGTAAAGCTATATTCTTCAGCTTCT 21191 30 100.0 35 .............................. GGTAAATCGGGCAAATTGTCCATTGGGTCTTTTAT 21256 30 96.7 35 .....................C........ CTTGCTACACTTTCCAATAACCATGTCGGAATCCA 21321 30 96.7 37 .........A.................... TTTCAATTAGTCGTTTGTGATAAATGATTGCAAGTGC 21388 30 100.0 36 .............................. ATAAGTACAACGTCAAACTCTGTATATTCCCTTCTA 21454 30 100.0 37 .............................. CAAATGGTGGCTACCCGTGAAGGGTTTGAAATATGGT 21521 30 96.7 37 .........A.................... TGCTCTAAGACTACTGCATTCCCATACCCTCCAAATC 21588 30 93.3 36 ...A.....A.................... ATTTTATCTTCTAATGGTTTTCGTGGTCTTGGCATT 21654 30 93.3 36 .........A......A............. AAAGAAAAGGCAATGTGTGGTGCAACGAGTGTAAAA 21720 30 90.0 36 ......T..A......A............. TACAAATCTTATCATAACGTATGATTTAAAGAATTT 21786 30 76.7 0 A.....T.GA......A......A.....A | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 94.9 36 GTTGAACAATAACATATGATGTATTTAAAC # Left flank : AAAAGTATATAATCCTTCTTAAACTAGTAGCTGAATGGATAATCCAAAGGTACATCCCTTAATGGGGATGTGCCTTTTTTCGTAGAAAGGGGAATTATTAATGGATAAAAAGAAAAAACAACGTGTTAGACGTGTAATTATTATAGGGATTGTCGCAATGATTTTATTGATATACAGTGGGAACGAATTTCAGGAGAAGAATGGAAGAATCTATGCTCCTGCAAAGTATTTCGAGACGGGAACAAAATTAGTTTCATTTTAATCTTTTTCATATTTTCATCGAACAATATGGGGTAATACGGAAGTTGCCGAACGTTTTACCAGATTATTTACCAACCTAATTAATTGGTGATAACATGTAAATGTAGATAAAGTAAGGAAATTCTGCATAAATTATAAGTGAATGAGATTTATATCAATTAGCTGGTAAAAAACTTATAAACCCACGTTTCTATAGTATAATAGTGGATACAGGAAATAAAGAGCCAGTATTATTCGGT # Right flank : AGCTAAAAAATGTTATTGGTTTAGGAAGTAATATGGTTAAATAATAAAGTAGAAAGTATTATAATTTCGAAATAAAAAGCACACTCTTGATTTGAACTGCCCCCTATAAAATAGGCAGTTTAATAAGAGTTGTGCTTTTTTATTTAAAACGGAAATATAAGGTAGGGAGGATAGAGTGCTGAATGAGCTCAGTATAATTTAATTGTTTACATTTTTGTAAAATAAATAAATCGTATTATTTATTATAATATGATATCCTATTTTTAGGAGGTGTGAAAATTTGAATTTTGAGTTAATAGTTACAACTTTATTGAAAGAAGATCTTCACTATGAGGATAGTTTGCAATTAATTGGTAGTTTCATAAACAAAGTGATGCTTCAAAGTGAAAAATTAAAAGCCTTGCATGAAAGAAAAGGTTATAAAAATTATGTTTTTAGCAATTTTTATCCATTTGAAAAAGATAAAATATACAAAAGTGGCCGAGTGTATGTATTTCGAT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATATGATGTATTTAAAC # Alternate repeat : GTTGAACAAAAACATATGATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 30992-31218 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFCQ01000009.1 Bacillus thuringiensis serovar japonensis strain BGSC 4AT1 4AT1_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 30992 30 100.0 36 .............................. GTCATAACGTCACAACACCTCCTAGTGAGAGTATTC 31058 30 100.0 35 .............................. TATACCTGATACGATGTAGTTTTATCACCGTATGT 31123 30 100.0 36 .............................. AGATTTAGAGAAGAAAGAAGTTAAAGATAATACAGC 31189 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTGAACAGAAACATAAGATGTATTTAAAC # Left flank : AAATTCTTTTATTCCATTTAATCTAAAGGAGAAAAAATAATGAAAAATCAAATGAATGCTAATTATGCGTTTGTTTTTTATGATGTAAATGAGAAACGAGTGACGAAAGTTTTTAAAATCTGTAAAAAATATTTAAATCATTATCAAAAATCTACTTTTAGGGGGGGGATTACTCCCTCAAATTTATTAAAAATGGAAAAGGAAATTAGGAATATTATAAATGAGGGGGAAGACTTAGTTACTATTATCAAAATGCTAAATGAATATAGCTTTGATGAGATTGAAATAGGGTATAGAAATAATAGCGATCTCCTATTTTTGTGAATTTACCAAGTGAAATGATAGTGGGAATCTAATAAACTTTGTTAATTCAAGACTTATACTATTTCTTTTTGAGAATTTTATTTTTTTTATGAACTGCTGGTAAAAAAATCACTAAACTCATATGCAGTATAGTATTATATAAAATATGAAGGTAATAAAAAGTTGATTTAATCGGT # Right flank : ATTTTGGTCTATTGATTTTACCGTAAGTACGTAACTTGTTGAACAAAATTCTTAAATTAGAATTGATTTCGAGTAACTCAATAGATAAGCTAAAGGAAAATTTTTAAAGAGAGAAGTTTTTTCATAGAAAGGGGAATTAAGAGTAGGAAAATCTATGCTCCTGCAAAGTATTTTGAGACAGGAACAAAATTGATTTCGTTTTGATAATAATTTGGTCTCTTTTACCAACTATAGTGAACAAATCTGCATGACATGTACTATAGTTGATGTTATAATATGTGTAGAAGTATTATAACAATAGTTTTTGCATAAACTAAAGAAGACGAAGTGCTGGTAACACTTCGCCTTATGTAACAGCTACCGCAAGGTGGTTGGTTACTAAAAATTTAGTTATTTTTTATTGAACCACCAAGTACGTTTGCGGCGTTGGGTGGTTCTTTTCGTTTTTCGTCGCTTTTTTTGTCTTTTTTTTCAAAACGTTGATAGGTATTTCCCTATAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGAAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //