Array 1 5110-4746 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEV01000027.1 Staphylococcus warneri strain SNUC 2993 contig027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 5109 33 100.0 35 ................................. AACTTATTATTTCCCCGATTATTGCTATTGCAAGT 5041 33 100.0 33 ................................. AACGAATGGCATAAAAACAGCATCTTTAATTGT 4975 33 100.0 32 ................................. AACAATGCCTATTTTTGAAGGTGTTAAACGAG 4910 33 97.0 33 ...............A................. AACTCTTTGTTCATTCTCTCGGTCTGGGTCTGA 4844 33 97.0 33 ...............A................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 4778 32 75.8 0 ...........T...A....G.A-.....AA.T | T [4748] ========== ====== ====== ====== ================================= =================================== ================== 6 33 95.0 33 GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAGGTCAAGGCTATGTACATCATGTCGCAGTCAATCTCCCTACAGATACAGACTTAAATGACATTTATGAAAAAATAGCGCGACAACCCAACCCTAACTCCGGTATCATCGATCGATACTTCTTCAAATCGTTATACTATCGACATAACCAAATCCTATTTGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGCTAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGGCAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAAAATGGATTATTAAAATTTTTAGTAGTAAAGTTTTATATGCTAGAG # Right flank : ATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTTAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATTCATAGATTAGATCGAGTGAAATCATTACTCACAGAATATAACTTAATAAATAGAGAACAAATA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Alternate repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 952-1580 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEV01000057.1 Staphylococcus warneri strain SNUC 2993 contig057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 952 33 100.0 33 ................................. AACAGAAAATGTTAGAGACAATCAAGCCGACAT 1018 33 100.0 33 ................................. AACTTATTCCAATTGCTTTATTGACGTTGAGCC 1084 33 100.0 33 ................................. AACAAAAAACCATTGATAACGAAAATGCGCGAA 1150 33 100.0 33 ................................. AACTTACATTTGAACAGTCTGAATTTGTACCAC 1216 33 100.0 33 ................................. AACATTCGAAAGGTTTTGTCGCAAGTGTTCCGT 1282 33 100.0 33 ................................. AACCAATTGTACATACACCAACTGCTCCGACTG 1348 33 100.0 33 ................................. AACTACGTATCCTTAAAAATGGTGACTATAGTA 1414 33 100.0 33 ................................. AACATACAAGAAGGAAAAGCACTTAGGTTTCAT 1480 33 100.0 33 ................................. AACAACTTCGGTAGTAAATCATGCAAAAGGTTT 1546 33 100.0 0 ................................. | A,A [1574,1578] ========== ====== ====== ====== ================================= ================================= ================== 10 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATTGTAAACTTTTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //