Array 1 1269-1746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPZ010000113.1 Mitsuokella jalaludinii strain MSK.21.47 GJPEHHAD_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1269 37 100.0 36 ..................................... TAGAAACATTTTTACCAAATACTAATTCTTTCATGA 1342 37 100.0 37 ..................................... GTGAAAAGTCAATGAATGAGTATCAGAAAAATCTTAT 1416 37 100.0 37 ..................................... CAGCAAAAGAAACAACAGATACATTTTTACCAAATGT 1490 37 100.0 36 ..................................... TTCATGATCGCCCATCTTTGGGTATTTGATGGCGAG 1563 37 100.0 38 ..................................... GCGGCGGTGAGCGTTACTTTGATTTCGATATTAGCCAT 1638 37 100.0 35 ..................................... TGCTTTGCGCTCAAAGTCATCTGCAGTGACTGGAT 1710 37 83.8 0 .............A.........A.....T..T.T.T | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 97.7 37 GTTGTAGCCCTCCCGATACCGTCTTCGGTATTGAAAC # Left flank : CTTCCATCATCAAGAATGGCGGCCCCATCATTGAGGCCATTGTTGCGAATGGGAAACGAGAGTTCATGCAGCTGACTGGCGATAAGGACGCTGCGTCTCAGGCAGAGCACGATATGGTGGAGAACTTCTGCAAGTCTGGCAGCGAACTCAGCGATGAAGAGATCGTGGAGCGACTCTGTTATATGTACGATTGATACTTGCATAGTGATGAGCAGCAGGCAGTCTGACGCTTGCTGCTCATTTTTGATTTGATTTGACAAAATCTTCATAGGATGGTATACTGCAAGAGTAGAAAACCTTTTTGACAGCCAAAAAGGCTGTAGGTTTTCCGATTTTTTACCGAACACCGCGAACCCTTGCGTGGCAAGGCTTTGAGCCGCTCGGCTCGGCGATATACCGAATAGAGCATATGGCGCGGACGGCTGAAAATCCGAAAAATCACGGAGGTTTTCCATTTTACTCATCTGGGGCCAGTAACCCCAAGGGCTCAGGGGCACAGT # Right flank : AGAACGTTTGCTTTAAGACAAAACATCACATGTTTTTTGACGCACAGGGAAAATCCCCGATTGCTATAATGAAGTCATTGTAGATGATGACTTCCGATAGCAGTCGGGGATTTTTTATAAGAGATTAAGAGATATGCCAGGGAATCTAAAAGCTTTTACAATAAATCTTCAGTTCTGGCAGGGATATGGTAAAAAGAGGCGAAATATTTCATATTATAGTATTGTTTGTAAGCGCTAAATCACCTGGTGTATAATTCATCGCCTTGATGGTTCACCCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCCCTCCCGATACCGTCTTCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 1 11505-12274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPZ010000052.1 Mitsuokella jalaludinii strain MSK.21.47 GJPEHHAD_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11505 37 100.0 35 ..................................... CAGCGAACTCCGCTGGACAGGGCCGTAACTTCTCG 11577 37 100.0 36 ..................................... GTGCAACATTAAGCTTTGGAGCGACCGTACACAGGC 11650 37 100.0 37 ..................................... GCCGCATAGCTTCGTCGTAGGACTTGATTTCTTTATA 11724 37 100.0 36 ..................................... ACTCCGTTTTTCTGGACTTTGCCGCTACGGCCGATG 11797 37 100.0 37 ..................................... ATGCCAAATACTTCGCCGAAGAGTTCCATGAATGCCT 11871 37 100.0 35 ..................................... TAAGACAAGTAATTGCAGAGATTATTAAGTTCTTT 11943 37 100.0 36 ..................................... TGTAAATCTTGAGCATGATAATTTTCTCCTTTAGAT 12016 37 100.0 36 ..................................... TCAGATGTCTGCGCCATCTTCCTCGACCTCACCCTC 12089 37 100.0 38 ..................................... GCGCTGTGCCGGGACTTCCATCCCGAGCAGGCCGCTAA 12164 37 86.5 37 A.A.C.................TA............. GAATATTCTGGAATACTATCAATCATTACTTTGAGTT 12238 37 81.1 0 ...A...........CG.....TA...........TT | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.1 36 GTTGTAGCCCTCCCGATACCGTCTTCGGTATTGAAAC # Left flank : AAATCATGCTCGAAGCGGAAGACGATGAAGAAGATGAAGAAGATGATGAGGAGGATGGTGAATAAAAAAGGTACCTGAGCCATCCTCTTGACAAGAGGTAATGAAGAGGGCAGCTTAGCACTGAAAAAATTCGACGGGTGAATTTTCTTTACCGTGATGAAGGAAATTCACCCGTTGAATTTTTCTACTTCTCGTTTGCACCAGTATCGTGGCGTCCTGCTGGGCAGATATGCGACGAAACAAGAGTGAATTTTGACAAAATCATCATATGATGGTATACTTCAAAAAGTAGAAAACCTTTTTGGGCGTCAAAAAGGTCGTAGGTTTTCCAGTTTTTTACCGAACACTGCAAACCCTTGCAGGGTAAGCGTTTCGGAGATCGTCACCGCGCAAAAGGCGAACAGAGCCTGCTGCCGGAGAGACGAAAAAGCCGGAAAATCGCAGAGGTTTTCCATTTTACTCATCTGGGGCCAGTAACCCCAAGGGCTCAGGGGCACAGT # Right flank : TGCACAACAAAAACCGGCAGTACAAGAAATTATCTTGTACTGCCGGTTTTTTAGATGCAGAAGCCCCGCAGCCGAAGCCGCGGGGCCGAAGGAGAGAGATGTTTGGGTGTATGTGATACAGTAAAAGCACCCTCCGTCATCATCCATAATTTCCCGCTTCTAGGTGTGTATTGACAAGTCGCAGCGACTAATTTATAGTTAAAGTATAAATTAGTCGTAATGGAGGTGTTGTTATGGATTATATCAAGAGACATATGGAGACACATATATTGCAAGCGGATCAGACATTTAAGGGACTGTTGGTAACTGGAGCCCGTCAGGTAGGAAAATCTACATTATTGCGCCATGTTTTTCCTGAGCGTTCCTATCTGACTTTTGATGATCCGATCTTGTTGACGCAGGCGCGGACAGAACCGGGACTGTTTTTCCGGAATCATCCGTATCCCATCACCTTGGATGAGGTCCAGCATATCCAGGAGCTTTTCCCGTACATCAAAATG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCCCTCCCGATACCGTCTTCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //