Array 1 55899-51816 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOAE01000002.1 Bifidobacterium longum subsp. suis strain BSM11-5 26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 55898 33 97.0 33 ................................T GTCCATGATATCGGGTACTGGTCACGCCGGTTC 55832 33 97.0 34 ................................T CCTCCACTCCCGATTCCGTCAAGGAAGAAGAGAA 55765 33 100.0 33 ................................. CCGTCGGCGTGCTGCTGCCGTCCACCACATACC 55699 33 97.0 34 ................................T CCGGGTGGATGCGGGTCCTGTTCGACGACGGGAC 55632 33 97.0 35 ................................T TTGACGGTTGCGCCGTTTTCGACCATCTGCGCTAC 55564 33 97.0 31 ................................G ACGAGGTCGTCCCCCAGATCCGTCGTACCGG 55500 33 100.0 35 ................................. CGACGAAGGTCACGCCCAAGGGCCAACAGTACCTC 55432 33 100.0 34 ................................. TCGGATCGGCCTTCGGCTGCTGTGGTTGGCCGAG 55365 33 97.0 33 ................................T TCCGCGCCCGCGAACGCGGCGCATTGCGAGGCG 55299 33 97.0 32 ................................T TTGTCGAACCGTCAAAAACGATGGCTGATAAA 55234 33 100.0 33 ................................. CGCCATTAGTTAAACAGACGTTATTAAAACCGC 55168 33 97.0 34 ................................C AGCATGATGTCACGTTCGGCAGTTGCTATGTGAC 55101 33 97.0 33 ................................T ATCTCCTGACCGTATTTATTGATGTAGTCCTGC 55035 33 97.0 31 ................................C CCTGACAATGATGATGTGCGTTTTTACCGTC 54971 33 100.0 34 ................................. GTTATCACGAGGGTTATTCGGTTTTCCACGCGTC 54904 33 97.0 32 ................................C GTACCACTGGACTGGATGCCAAGGTATCCCAA 54839 33 97.0 36 ................................C GTGTCGGTTTGCTTGCGTGTGTTATCTGGGGTTGCC 54770 33 100.0 33 ................................. GTTATCACGAGGGTTATTCGGTTTTCCTTCCGC 54704 33 100.0 34 ................................. TGCATTCCAGCGAGGCGGGCGGGGTGATGAAACG 54637 33 100.0 34 ................................. TTCAGCGTGTCGAATACGTCAACGCGCACTGCAC 54570 33 100.0 32 ................................. AAGCGCGCAACGAAGCCGGAGTCCAACCCAAC 54505 33 97.0 33 ................................C AACGGTTGGGCGTGACCGACGAACAGGAGGCCT 54439 33 97.0 34 ................................C ACAGGATTAGCCCGTGTCCCAAGTGCGGGGGCAA 54372 33 97.0 33 ................................T GCTCCGATATGCGTCGCCTGCTAAGCGAGAGGA 54306 33 97.0 34 ................................G TGCGCTTGGTGCAGCGCTTCGGCAACCTCTGGGA 54239 33 100.0 32 ................................. TCTTGATAAGGTCCCATCTGATGAAACCACGG 54174 33 100.0 34 ................................. TACGCGAGTATCGCGTTCGCCCGGTTTTGCGCCA 54107 33 97.0 34 ................................C ACAAGCTGCTCTCCTACCGCGCGTTGGACATGAC 54040 33 97.0 34 ................................G ACATGCAGACGCTTATGCTGGAATTGGCGCAATC 53973 33 97.0 34 ................................T TCTGCGAGCCCTTCGCATAGCGGCATACGATCAG 53906 33 97.0 35 ................................T CCTCGCGGATGGTCATGGATGGCGTGTACTTGGCG 53838 33 97.0 35 ................................T CGCATGGCACGGTCAAGGCGACGATCCCGGCGGGC 53770 33 97.0 31 ................................T TCTTGAATCGCGCCTCCGGGTCGACTTTCCT 53706 33 97.0 34 ................................G TCTCGGATGATGCGATCACAATCGCACGAGCCTT 53639 33 100.0 33 ................................. GACTCGTGGACCCCGGTTTGATACCGGTTATTG 53573 33 97.0 33 ................................T GATTGTCTCCGTCACGACCCCCGTAGGAGAAGT 53507 33 97.0 33 ................................G CGGTCAAACGATTGCGCGAGCTCAGGCCACGCG 53441 33 97.0 34 ................................C CCGTTAGGGGAATGAAACCAATATAATGCTTATT 53374 33 97.0 32 ................................G AATCCCTCATGATCTCTTTGGGCGAGGGAGGT 53309 33 100.0 34 ................................. ACGAACAGCTGAAAAACGCCGGAAACAGCATGTC 53242 33 97.0 34 ................................C CGGATGGTGAGATTATCAGACTGGATATCCTCCG 53175 33 97.0 34 ................................T TGAGCGGTAAGGTTTGATGTACGGCGGGCGTCGG 53108 33 97.0 34 ................................T TTATAAATCGGGTAATAGTCGGCGCTAAGATGCA 53041 33 97.0 34 ................................G CTACCGGTCATCGCTCTATCGAACGTGCCGCCCG 52974 33 97.0 34 ................................C ATTTTCAATGGTAGGTTTTTGATGCCTAGCGCTT 52907 33 100.0 34 ................................. GGGACCTGGCGGGGGGCGTGATAGCGGTGTGCCT 52840 33 97.0 34 ................................C GGTAGGTGAATTTGCCGTCCGGGAGTATGGTGAA 52773 33 97.0 33 ................................T GGGATCGGATTGGCGATGGCGAGACCTCCGTCA 52707 33 100.0 34 ................................. GTTGGCGTGGGTTGCCTCCCACCGTGGACGAACG 52640 33 100.0 34 ................................. CTTGTCCCGCCTGACTGAGGGCGATGAAGTACCC 52573 33 97.0 32 ................................C ACGTGTTTTGTATATCGTTTTGCAGTTCCATT 52508 33 97.0 33 .......T......................... CACGTACGGCGTTGCCAAGTCGCAACATGTTTG 52442 33 100.0 33 ................................. TTACCGATGTACGGGCGGAAGCTCCAAACACGA 52376 33 100.0 32 ................................. GGCCGTATCTTTCGGATTCGCAGCACGTGCGA 52311 33 97.0 33 ................................G CGTTAGTGTTGATTTTATAGAGGTTAGTGTCGA 52245 33 97.0 32 ................................C TGTCCCAGGAATCCCTTACCCCCCCCTGCTTT 52180 33 97.0 32 ................................C ATCCTGCTGGTGGAAGTCCAGCATGACAGCCG 52115 33 100.0 33 ................................. CGAAATCGCTTGAAATCAAGTGAATTGAATAAA 52049 33 97.0 35 ................................T ACAAGGTACACCTTGATAAGATTCCATCCGACGAA 51981 33 97.0 33 ................................G ATACCGCCACGTCACGGATCCCGTATGGATTTA 51915 33 100.0 34 ................................. AGCTGCCGCCGATGATACCGGCCATGCCATTGAG 51848 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTCTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGACCATACGCGGCGGTCTTCAGGTAGATCGGGCGCTTCAGGTCGAGCTTGTCGATGATTGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGCGATCTGGATCTCGACTTTGTGAGCCAAGCCGGCAGCTACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //