Array 1 3044884-3043220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012924.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3044883 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3044822 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3044761 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3044700 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3044633 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3044572 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3044511 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3044450 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3044389 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3044328 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3044267 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3044206 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3044145 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3044084 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3044023 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3043962 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3043901 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3043840 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3043779 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3043676 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3043615 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3043554 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3043493 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3043432 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3043371 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3043310 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3043249 29 96.6 0 A............................ | A [3043222] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3062268-3061142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012924.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3062267 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3062206 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3062145 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3062084 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3062023 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3061962 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3061901 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3061840 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3061779 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3061718 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3061657 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3061596 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3061535 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3061474 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3061413 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3061352 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3061291 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3061230 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3061169 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //