Array 1 3022643-3021148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020492.1 Salmonella enterica subsp. enterica strain 08-00436 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3022642 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 3022581 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 3022520 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 3022459 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 3022398 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 3022337 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 3022276 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 3022215 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 3022154 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 3022093 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 3022032 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 3021970 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 3021909 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 3021848 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 3021787 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 3021726 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 3021665 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 3021604 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 3021543 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 3021482 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 3021421 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 3021360 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 3021299 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 3021238 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 3021177 29 96.6 0 ............T................ | A [3021150] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3039048-3037921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020492.1 Salmonella enterica subsp. enterica strain 08-00436 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3039047 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 3038986 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 3038925 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 3038864 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 3038803 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 3038742 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 3038681 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 3038620 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 3038559 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 3038498 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 3038437 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 3038376 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 3038315 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 3038253 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 3038192 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 3038131 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 3038070 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3038009 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 3037948 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //