Array 1 411-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWJ01000064.1 Salmonella enterica subsp. enterica serovar Hadar strain NCTR488 NCTR_488_contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 410 29 89.7 32 ...G.......T........T........ TGGTGGAGTGCCGTATCGCTTCCGTTTCATTG 349 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 288 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 227 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 166 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 105 29 89.7 33 ...A.A.................T..... CTTTCCTTGAGCAGGAAATGCAGTCAGTCTTCC 43 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGCAATGTTTCTTGCTTCGCAAGAGTCCAGTAC # Right flank : GCGACAGCGCGGAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80323-82119 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWJ01000013.1 Salmonella enterica subsp. enterica serovar Hadar strain NCTR488 NCTR_488_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80323 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 80384 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 80445 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 80506 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 80567 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 80628 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 80689 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 80750 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 80811 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 80872 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 80933 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 80994 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 81055 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 81116 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 81177 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 81238 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 81299 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 81360 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81421 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81482 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81543 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81604 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81665 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81726 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81787 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81848 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81909 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81970 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 82031 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 82092 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 98801-100540 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWJ01000013.1 Salmonella enterica subsp. enterica serovar Hadar strain NCTR488 NCTR_488_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98801 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 98862 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 98923 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 98984 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 99045 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 99106 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 99167 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 99228 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 99289 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 99350 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 99411 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 99472 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 99533 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 99594 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 99655 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 99716 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 99777 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 99838 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 99900 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 99962 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 100023 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 100084 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 100145 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 100206 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 100267 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 100328 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 100389 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 100450 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 100511 29 100.0 0 ............................. | A [100538] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //