Array 1 1179566-1179919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013847.1 Clostridium botulinum strain Af650 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1179566 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 1179633 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 1179697 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 1179761 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 1179825 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 1179890 28 89.3 0 ......A......A.............A | TA [1179912] ========== ====== ====== ====== ============================ ======================================= ================== 6 28 95.8 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCAGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATGTAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : AATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTGAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2456806-2456513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013847.1 Clostridium botulinum strain Af650 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2456805 30 100.0 35 .............................. CCTCATTTTTGAATTATGAATTACTTATTGTTTTG 2456740 30 100.0 36 .............................. AATAGAAGGGCTTAACTATAGATTCCCGATACTTGA 2456674 30 100.0 37 .............................. TAATCTTCTAAGTAAGGTATCATTACTGACTTAACCT 2456607 30 100.0 35 .............................. ACTACCTAATGTTCTTTATTTTAAAATCACAAGTA 2456542 30 86.7 0 ...A...........A....A........C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CAATACTAGGAGTAGCTAAAGGACTGCTGATGTATAGTACAAAATTGACATAATATGATATACAATGTTTGTGTTCATCAACTAAGAAAGACATTTCTACCTTTCTTAGTTGATGAACAATTTTCTTATTTAACGACTGAACTATAAAATCAAATAATTTTTCTAAATGCTGTATTATTCAGAAATGAACTTTACGGCATTTTTATGTCGCAATACAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGCGCTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTGACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TGTTTAGTTACTGCAGATATTCGTTTTTAATATTAACATATGAATTAAAAATTAATATGATATATGACAAAAATTATTAAGAGTCTTAGAAGAATCTAAGGCTTTTTATTTTATGTAAAGTTTTAAAATGGAATATAATAGCTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGATATAATATAGATAAATTTGTATAAAGACATGTATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGACCTTGGCTGCAAAATAATGGGGATTTAGATTTATTTACGCGTAGATTGGAAGATAATTTGGAAAAGAAATATAAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAAAGAGCATAGAGTTTAAAAATAGAGAGCCAATGCATTACGACTATAAAGGTATAAAGTTATTAGCAAATAAGGTAAGTATAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2460809-2460584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013847.1 Clostridium botulinum strain Af650 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 2460808 30 93.3 35 ........A...G................. TGAAAAACATTAGAACCACATCCACAAGGGTTTCT 2460743 30 96.7 35 ........A..................... GCTAAATTCTCATAAGAACCACGCCATCTGTCCTC 2460678 30 100.0 35 .............................. TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 2460613 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== =================================== ================== 4 30 96.7 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATCCCGCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCCTCCTAGAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCCGTACAATATTTCTCATAGAACTATTATATGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATTTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTAAAATAAAAGAAAAGAACAAAAATTTTTCCAACCGACTTTAAGTTGAAAATTTATGGAGACTATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATATCCTAATCGGTTGGAAAATTTTATTTATAACCTTGTAAAATCAATGGTTTTATGATATTCTTGAAATTAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGGTATTGACTTGTAGTCTAAAGTTGCACCATAAGAAGGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATACGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATCATAACCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 2564747-2564258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013847.1 Clostridium botulinum strain Af650 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2564746 30 100.0 35 .............................. GTAGTTAAAATTGGTTCATATTCTACACCTATTTT 2564681 30 96.7 36 ........A..................... TAGTTAATATCCTCGAGAGTTCTTAACCAAAAATTC 2564615 30 100.0 35 .............................. CCTAATTGTTGAACATTAGTATTACTCTTTTGTGA 2564550 30 100.0 36 .............................. TATACTTAATCATTAATTCCCTAAATAGAGAAGTCA 2564484 30 90.0 34 ........T.......A..C.......... ATTCTTTATAGTATTGTAGTAATAATTCATTAAA 2564420 30 93.3 35 ........T.......G............. TTTTGCTTATTTTACTTGTGCATTTACTACAATAT 2564355 30 93.3 36 ........A.......A............. TTAAAACCTTGAAAATCTTCTAAAACTATAATGTTA 2564289 30 86.7 0 ........T......GA............A | TA [2564262] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 95.0 35 GTTGAACAGTAACATATGATGTATTTAAAT # Left flank : TATGGCGTGTCGCAATTGTGGTTATACCATACCATATAATAATTGATTTTAATAACGATTACTAGATAAAAGAAAAAAGATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATATTAAATACAATGCTTCCTAATAGGTTAAATATAAATGTACTTATTTAAACAAAAGAACCCCAATAAATGAGGTTCTTTTTGTATTGGTGCTGTATATTGGCTTATTTTTATTACATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : ATAGTAATTGTAGCCTATGCTATAGTTATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATACTAAATATAAGATTTTCTATAAGGTATTGACCTTCTCCAAAATACAAAAGAACCCCAATAAACGGGGTTCTTTTTGCGTGGATTTATATATATTGGTATAGTGTCTTGGGCTGTTTTTATTATATCCAGATATAATAAATTTAATCACACATAAAGTTGTTACATAAGTTAAGCATTATGAGAATCATCTATAGTGTTAACTTTGTTGAACTCATTTAAAAAATCTTCATATAAGTTTTCCCTATGTTTTTGGCTTTGGCCTGTTATGATTTCAACTAATTTACAATGTTCTATAGCATTTTTTATGATAGTTCCCATATCTAAATTATCATTTGGTGATTCTAAATAACTAAGTTCACCCATAATTTTTTTACGTTGATTTTCAGGATATTTTGATATAGTATTTTGATAAGCTTCTATTATGGATT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2657285-2656924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013847.1 Clostridium botulinum strain Af650 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2657284 29 100.0 37 ............................. CCATTTAGATATGCTTTGTATTTTTTTAATGTATTAA 2657218 29 100.0 37 ............................. TTCTTTACATTTGATGTTATAGAACTTTCACTGTTAA 2657152 29 100.0 36 ............................. TCTTTTTTAGTGGTCTTGTATCGTTATGAGCTTCTA 2657087 29 93.1 37 ..............AG............. TCTAATTGTGTAGTATCAAATCCATTAGCCATAATTG 2657021 29 93.1 38 ..............AG............. AGTCTAATTATTATAACAGCATTTTCTGTGTAAGGCTG 2656954 29 89.7 0 .......A......A.............A | TA [2656928] ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.0 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : CTAATGCTATTGTTAAAGGACTAGTAGGGAAAACTACAAGCAATAGCACACCAAGCGAACCAACAAATAACAATAATAGTTGGATTAATTTAGATGGAAGAACAGGTACAATAAATACACCAAGCGGTGTAAATGTTAGAGAAAAGAAATCAACTTCTAGCAGAATATTAGGTGCTTTACCTAATAGTTCAAAGGTTAACTTATATCGTAAAGAAGGAGATTGGATACATATATATTATCCACCACATGGGGGTTATGTGTATGCTAAATATGTAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGA # Right flank : ATGGTAGTTGTAGCTTATGCCCTATAGCTATTATTTTTTGCATTTAAAGGAATTTTCTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTAATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGCATGGGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAGGTATAATAATCTTAATCATGTATAGAGGAATTATATGAAATATGTAGAATAATACAAATTAAGTTCGCAACTATGCTTAATTACATAAGCACTAAGTCATAAACTTAAAGCCCTGGGATAAACCAGGGCTCTTTTTAAAATTACTCTTTGCTATCTTTTTTCATTTATATTAAGATATTCCATTAATCCAGCCTGTAATATTTGCGAAAAATTAACTTTGTTTTCCTCAGCCATTTTATTCAACCATGAAGGTATTGTCAATGTTTTTTTTACTGCTTTATTATCGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : TTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //