Array 1 466061-466757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWI010000003.1 Listeria marthii strain FSL L7-0504 NODE_3_length_466798_cov_44.418411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 466061 36 100.0 30 .................................... GCAATTGGTGTGCCATCGATGGCAGCTGTT 466127 36 100.0 30 .................................... AGGCGCTCGACCAACATGTTCAATTGTTCA 466193 36 100.0 30 .................................... TTGAGATTATGCCATTCGGCGTAATGGCCT 466259 36 100.0 31 .................................... CGACCGCCAGTAAAGAACTTCCCTAGCTCGA 466326 36 100.0 30 .................................... GTTTAAACTAGATTCTTTTCAATCAGTAAA 466392 36 100.0 30 .................................... TAACTATGTAACCAGTTTGCGGCCGCAGAT 466458 36 100.0 30 .................................... TCAAATTCCGGGACGCTAACCGAAATGGTT 466524 36 100.0 30 .................................... TAATGATAAATATCTCACCATCGGTCAGAT 466590 36 100.0 30 .................................... TTTGACGAGGTATCAGTTAAGCAAATTAAC 466656 36 100.0 30 .................................... TCAGGATAAAGATTTTCAAGTAGAAACCAT 466722 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GATTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTGAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGATAGGTGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAATTCTACGAG # Right flank : TTTTGCTTCGTTTGTTGTTCGTAGTTGATAGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 647068-644774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWI010000001.1 Listeria marthii strain FSL L7-0504 NODE_1_length_910330_cov_35.321289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 647067 29 100.0 35 ............................. AAAGCACGTTTAACGCATCCGTATCAACTTCCGTT 647003 29 100.0 37 ............................. ATGTGACCGTTCGCATCAAATCCAATAAGTTTTGTGA 646937 29 100.0 35 ............................. GCAACTACGTCTTCATTACTGAATGCGATTGCGTT 646873 29 100.0 35 ............................. TTGCAATATAAAGTTTCAGCACCTTGTCCGCCGCC 646809 29 100.0 34 ............................. CCCCCTTTCAGCTTAAAAAAAATAAGCCTACTCG 646746 29 100.0 35 ............................. GTTTTTGTAATGATTGTGTCCAGACCTTCATCTAC 646682 29 100.0 35 ............................. TTTTTATAATTGTGTTCTTTTGCATATTCATATAA 646618 29 100.0 37 ............................. AACGACTTCAAATATCTTATAGCATCAATCATCATGA 646552 29 100.0 35 ............................. ATGTATTTTTCAAATTTCTTAGCTGCAACATCATT 646488 29 100.0 34 ............................. TTGAAAGTGAAATATTAAAGTGCTCTGATATATC 646425 29 100.0 35 ............................. CAAGAAGCACGTAAGATGTTTGTAGCACCAGATAA 646361 29 100.0 36 ............................. TGATTTGTGGCGTTCTGCATTTTATCCTTTACAAAC 646296 29 100.0 35 ............................. AATTTTTTCGCAAAGAAAGCGTTTGTCTGCTCCCA 646232 29 100.0 35 ............................. GACGTACTAGCCATTTCCAACCCACCGAACAGGAC 646168 29 100.0 36 ............................. AAGAGCATTGAAGGATGATACCCTAGTAAGACTTGC 646103 29 100.0 38 ............................. TTAGGTAGCTCTGCAACTGCCTTTTTGAACGTTTTATC 646036 29 100.0 35 ............................. TTCTCTGCTGCACTGATAGCCGCCATAAGTCCTGA 645972 29 100.0 36 ............................. TTCTATAATTGGTATAAGATTACTAACAACATCGTA 645907 29 100.0 37 ............................. AAGGGCGATCGTTAATGTTTCTCAACAACTGAAAGAT 645841 29 100.0 38 ............................. AAGAGCAATCGTTAATGTTTCTCAACAACTGAAAGATT 645774 29 100.0 36 ............................. CCGGTTAATACTTGATAGAGTACAGATGAATTATTT 645709 29 100.0 37 ............................. TAAGTTATCAAATTCAATAGGGTCAGAAATTTTATAT 645643 29 100.0 34 ............................. TCGTCACTAAACATAATTCCGTTAAGCGCATCTA 645580 29 100.0 36 ............................. CGGGCAATAGTCGATTTTAAAGTATAGATAATCCAT 645515 29 100.0 37 ............................. TAATATTCTTTTATAGTTCAACTTTATCCACCCTTTT 645449 29 100.0 36 ............................. GATGAAAGTGCGTCATCTAATCGTAACGATGATAAT 645384 29 100.0 35 ............................. ACAGTTGACTAGAGAACAGGAGAAAGTTTTAAAAA 645320 29 100.0 37 ............................. TTTTAAAACGTCTAAACTTGCGGAAGCAGGATTTACG 645254 29 100.0 36 ............................. AACCTCTTATCTGAACGACACAGAATGCACTTTGAT 645189 29 100.0 34 ............................. ACATTTGCATTAGTCTTGCCTCCGACGGCAAACC 645126 29 100.0 34 ............................. TCAAACGATAATCGATCTTATCACGATCTATTTT 645063 29 100.0 37 ............................. AGATAATCGACGATTAGGGTGTCTAAGCGTTTAACCC 644997 29 100.0 36 ............................. TTGATCAAAGAATCCTTGTATCTTCTAAAAGCATTA 644932 29 100.0 36 ............................. TCAAGACCGGTGTTCACGTCTGTAGCACCTACACCC 644867 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 644803 29 86.2 0 ...............C......CC....C | A [644778] ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAATGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAAGCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCGGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCTGCTCCCGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGCACTTTCTTATTCGCAAGCAGCTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 664072-663198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWI010000001.1 Listeria marthii strain FSL L7-0504 NODE_1_length_910330_cov_35.321289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 664071 29 100.0 35 ............................. GCCTTATACATGCGTGTAGGTGTTGTCTTAAAGTC 664007 29 100.0 37 ............................. TCGTCTGTTTTCATTTTCTCAATTAACGACAGTGCCG 663941 29 100.0 34 ............................. AAGACAAACTTACCACAATGCTGACATAAGCCAC 663878 29 100.0 36 ............................. TAAATCTGGTCGTGTATCAATTTTCTTTTCTCGTCG 663813 29 100.0 37 ............................. GTGGTTATTGTTTGAACAACTTGCTTTCCTACGCGAC 663747 29 100.0 36 ............................. AGGCATGGCCGAAGAGGTGAAAAAATCCGTAGATGA 663682 29 100.0 34 ............................. CTTGGGATAAAGAAATCATCATAGCTCCCCCACG 663619 29 96.6 38 .........................G... TTCTCAGACGAACCAAAACCTTCGGAGTGCGAAGTTGT 663552 29 96.6 37 ..............A.............. GAAACCGCAGGACAGGCCCAGTTTGCGCGATTTGTGT 663486 29 96.6 35 .......T..................... AGAAGTTCTTGAATGTAACGTAAATCACAACCATT 663422 29 89.7 36 .......T........A.A.......... TACGATGACATCGCAACTTACGAGGGCACATTGACA 663357 29 93.1 39 ......A.......A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 663289 29 93.1 33 ............C...A............ CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 663227 29 79.3 0 AC.....T......A.A......A..... | A [663203] ========== ====== ====== ====== ============================= ======================================= ================== 14 29 96.1 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAATCATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATTGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTGAGTAGTGTGAAAAAGGCTGGGTATCGACAGAAAGGTGAGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGTTTTTGAAAACTATGTAGAGAAGGGTGGATTTTCGTTAGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGATTTGACTTTTAAAATCCTTACTCATCTTCCAATCCAAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCACGTTAACAATTCCGCAACAAACACACCAAAATCCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //