Array 1 373-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYL01000032.1 Salmonella enterica subsp. houtenae serovar 44:z4,z23:- strain 97-0047 NODE_32_length_19540_cov_2.84876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 372 29 100.0 32 ............................. CTCTGACGGTAGCGGTTTGGTGTAGTCATTTG 311 29 100.0 32 ............................. GGTAGCGCATCAACATCATCAACCAGCCATAC 250 29 96.6 32 ............................A GCAGGGCTGGGAGGGTCATTGTCTCAAGGTCA 189 29 100.0 32 ............................. ACTTGGGAATGCGCTGAGGTGGGCAGCAAGCC 128 29 96.6 32 ............................T ACGGCAAGAAGCGCCGGAGAAGATTACCGATC 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : GCGGCGAGGAGCAGTCACGGAGGCCAAATAATTGAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100385-98707 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYL01000018.1 Salmonella enterica subsp. houtenae serovar 44:z4,z23:- strain 97-0047 NODE_18_length_100425_cov_2.78836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100384 29 100.0 32 ............................. CCGAATCTATTCTCTATACAGATCTTAAAACA 100323 29 100.0 32 ............................. TGAACGAGGAGATAATGCAGGTAGCGGCTGAG 100262 29 100.0 32 ............................. CGAAAAGGGCTGGCGGAGTGCGCCAGAGGTCG 100201 29 100.0 32 ............................. TGATTTCTTGCCTGCTGTTTCGAGGGAGGTGG 100140 29 100.0 33 ............................. CGTTTGGCATCGATGTACATGCTCAAAGCATGA 100078 29 100.0 32 ............................. ATCTGATTGATAGCGTCTGATAACGCTCCGTC 100017 29 100.0 32 ............................. AAATCCGCCAGGCTGAAAGAGGCCTATATAGC 99956 29 100.0 32 ............................. ATTTACCGGAACGCTTGTCTCACCAGAGATAA 99895 29 100.0 32 ............................. GGGAAATGATGTACCGGGTTTATATTAGAACG 99834 29 96.6 32 ...............A............. CAGAACTCAGCATCAAGGGAAGCGAAAAGGGC 99773 29 100.0 32 ............................. AAATGGCATTCGCTGTATGCATGGGATATTCC 99712 29 100.0 32 ............................. TCTGAACTGGCGGAAATATTCAGTCGCTGGCC 99651 29 100.0 32 ............................. GGAAAAATCCGACAAGACCCCCAGAAGTACGC 99590 29 100.0 32 ............................. CCAAAGGGGCCCTCGGTTTCCGCGAGACCTGC 99529 29 100.0 32 ............................. CGCCCGCGATAATAGTGAGTAAAATTTTCTTC 99468 29 100.0 33 ............................. CGGCGCTCACGTTATTTTTGTTCTGCCAATGCC 99406 29 100.0 32 ............................. CTATCCCGTAATCTTCTACGGTAATAACTTCA 99345 29 100.0 32 ............................. GGAATCAAAATGAACGCATCAGTAAATGAAGT 99284 29 100.0 32 ............................. GCCTTTTGCCGTTAGCACTGCGTTAGGGACGC 99223 29 100.0 32 ............................. ATGCCCGGGCGTTAACGCTGCACGACGAATTG 99162 29 100.0 32 ............................. TTTTAAAATATCTGTCAATAATGGCGGCAGCA 99101 29 100.0 32 ............................. GGTACACCTCTGGTAATAATGGAGGTCTTGAT 99040 29 96.6 32 ...........................T. GTTATTGCATGGCGTGTCCTTGATGCTCAATT 98979 29 100.0 32 ............................. CCAAAGATTCTCATGGCCTCTATGGACATGTC 98918 29 100.0 32 ............................. GCATGATGAATCTTAAAAAGATGCACCACGCA 98857 29 100.0 32 ............................. CGCTGGCGCTGTTCTTCGGTAGATTTCTCCGC 98796 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 98735 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAACCGCGGCGAGGAGCAGTCACGGAGGCCAAATAAT # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //