Array 1 556129-557236 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWVI01000001.1 Pseudomonas aeruginosa strain 2S030611BSL_PA1 IPC26_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 556129 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 556189 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 556249 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 556309 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 556369 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 556429 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 556489 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 556549 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 556609 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 556669 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 556729 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 556789 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 556849 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 556909 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 556969 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 557029 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 557089 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 557149 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 557209 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 296-443 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWVI01000023.1 Pseudomonas aeruginosa strain 2S030611BSL_PA1 IPC26_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 296 28 89.3 32 ACA......................... AAAAATAATCGAACGCATCTTGCACCCACTTA 356 28 100.0 32 ............................ TTTGAGTGAGCGGTAGTGCGCTATGCGTGAGC 416 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCCAGTACGCCAGCCGCCTGTTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGCCGTCGGGGGAATTGCTGGGATAACTCGCCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAGGCCCAACGGGACATCAGTCATTACCTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCACTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10619-8965 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWVI01000023.1 Pseudomonas aeruginosa strain 2S030611BSL_PA1 IPC26_23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10618 28 100.0 32 ............................ AGAGCAAGAAACATCAAGCCTGGAATTATGGC 10558 28 100.0 32 ............................ GTGTCCTCGACAGGATTCTTGAGCGCGCGGCG 10498 28 100.0 32 ............................ GCTGCAATCAGAACAAACCGCGTCGTCTTCGT 10438 28 100.0 32 ............................ ACAGAGCAATGCCAATGCGAGGATTCATACGA 10378 28 100.0 32 ............................ ACCAGGACGGCACCGGAGCGCCCGGACTAATC 10318 28 100.0 32 ............................ TGTTTCCGAAGTGCAAACGGAACTTTGGCGAA 10258 28 100.0 32 ............................ TTCACGCGGGCGTTCGCTTCGTCCAGCTCGGC 10198 28 100.0 32 ............................ AAATCACGCCGCCCGAGTGCCACTTCGGACTC 10138 28 100.0 32 ............................ TCAACTGGGGAATGTCTACTTGCGAAGACTGC 10078 28 100.0 32 ............................ TGCTCCGGAAGGTACTGAAGCGCCCAGGTCGG 10018 28 100.0 32 ............................ AGCATTCGCAGCCCTGCAATGGGGCTGCTCGT 9958 28 100.0 32 ............................ TTAAGCCTCAATCGAAGTTCCACCCGGCTTGT 9898 28 100.0 32 ............................ AGGTGCTGGCGTCGATTGTCAGCGCGGTCAGA 9838 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 9778 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 9718 28 100.0 32 ............................ ACCGTGATTGTGCCCATGCGGCGCATGTGCAT 9658 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 9598 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 9538 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 9478 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 9418 28 100.0 32 ............................ AGCAATGCGATCCGAGGACTCCAGAACGGTAT 9358 28 100.0 32 ............................ AACTCCCGCGCCAAGGGCGCCCGCGTAGAACT 9298 28 100.0 32 ............................ GATACAACCTGGCGATGGGGAACCAGGTGGAT 9238 28 100.0 32 ............................ ATGGTGACGCTGCACGACGGCCGCCAGGTGGC 9178 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 9118 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 9058 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [9034] 8992 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //