Array 1 24862-22854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEYP01000007.1 Acinetobacter baumannii 1417041 ab1417041.contig.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 24861 29 100.0 31 ............................. ACCCTCGCCCGCAACAGTAGTTGCATTAGCT 24801 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 24741 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 24681 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 24621 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 24561 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 24501 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 24441 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 24381 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 24321 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 24261 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 24201 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 24142 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 24082 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 24022 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 23962 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 23902 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 23842 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 23782 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 23722 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 23662 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 23602 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 23542 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 23482 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 23422 29 82.8 31 ..CGC........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA 23362 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 23302 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 23242 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 23182 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 23122 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 23062 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 23002 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 22942 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 22883 29 82.8 0 .G..G...................AT..T | C [22878] ========== ====== ====== ====== ============================= =============================== ================== 34 29 93.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29952-31300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEYP01000007.1 Acinetobacter baumannii 1417041 ab1417041.contig.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29952 28 100.0 32 ............................ TAAAAACCTGTTCAGCTACTACAAGTCTGCTA 30012 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 30072 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 30132 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 30192 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 30252 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 30312 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 30372 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 30432 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 30493 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 30553 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 30613 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 30673 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 30733 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 30793 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 30853 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 30913 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 30973 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 31033 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 31093 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 31153 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 31213 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 31274 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //