Array 1 1800644-1801010 **** Predicted by CRISPRDetect 2.4 *** >NC_011898.1 Ruminiclostridium cellulolyticum H10, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1800644 32 100.0 34 ................................ TCAGGAATAAATACAATGTGATACTGTCCAACCC 1800710 32 96.9 35 ..........A..................... AAATGAACTCTGGTATGTCAAGGATCTGGAGCAGG 1800777 32 96.9 36 ..........A..................... CTTACTCCCGCAATGGTTTGAGGTTGATTTGTCGAA 1800845 32 100.0 34 ................................ GTCAATGTGGAGAGCATTTGCAAGTTCGGATATA 1800911 32 100.0 35 ................................ TCCTAAAGCTTCAAGCTTGGCTATTGATAGTGTGG 1800978 32 78.1 0 .........................CCTTTCC | T [1801001] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 95.3 35 GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Left flank : ACGAGTATCCTCCATTTTTGTGGAAGTAGGTGAATTCTATGATGGTACTTATTACATATGATGTTAATACTGAATCTGATGGCGGAAAAAAGAGATTGCGCCGTGTTGCAAAGCAATGTATCAACTACGGTCAGCGAGTTCAGAATTCAGTTTTTGAATGTGTTATGGATGCCGCAAAGTGCAGGGAAGTTAAAAACAAATTGGAAAAGATAATTGACAAGGAAAAGGATAGTTTGAGATTTTACTACTTAGGCAATAATTATCAAAACAAAGTTGAGCATATTGGAACAAAAGATTCTTTTGATGTGGAAGGAACATTAATTATTTAGAGTGCGAATGTGAAGCAAACATTAAAACACGGGAACATTCGCACCGAAAAAACAGTACATTTTAGGTAAATAGTGAAAAATGTTTATTGATATTTATTCGCAAACGAACTTTTATTACTTATTTTTGTGCAACCTTAACAAATAGACTTGATTGTTTTGTTTATTTTTGCT # Right flank : CCTGATAAATTAGACACAAAGAATGGCGAGATTTCTCCGTTTTTCTTTGTATCTTGTTAAATTTTATTTAAGCCGCTTTGTTTTGCTTTTCGAATTCCACAGGTGACTTATAGCCAAGCTTTGAATGTAATCGTATCCGATTATAAAAGACTTCAATATATTCAAAGATAGCCAGACGGGCCTCAGCCCTTGTTTTGAACCTTGTTAAGTAAATAAGCTCCGTTTTAAGAGTACCAAAGAATGATTCCATACAAGCATTGTCGTAACAGTTACCCTTACGGCTCATACTTGCTGTGAAACCATTGCTGTTCAGCACTTTCTGGTATTCCTTGCTGGCATACTGAACCCCTCTGTCGGAATGATGAATAACCCCTTTGGGATGTCTTTGGCGACCTATAGCTTGCTTTAAAGCATCTATACAAAGCTGTTTTGTCATAGTACTATCCATTGCCCATCCAACAACTTTTCTGTTATAGAGATCAATAATGGCAGCCAAGTAG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 1802338-1802842 **** Predicted by CRISPRDetect 2.4 *** >NC_011898.1 Ruminiclostridium cellulolyticum H10, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1802338 32 100.0 34 ................................ TCCACGATCTTGGTAAAGCGGGCTACCACAACAA 1802404 32 100.0 33 ................................ CGATTATTTTGCCCATAAAAAAAGCAATAACCC 1802469 32 100.0 37 ................................ TGCGAGAAAATATACCGTTACAAATCGTCAGTAAGAA 1802538 32 100.0 36 ................................ TGCAAATGCTACACAGGTAGTTTTGAACCGTTCGCC 1802606 32 100.0 36 ................................ TGATGATGAGAGGATTGTATATACCGAGGTTAAAAA 1802674 32 100.0 35 ................................ AGAAAGTGAATCATGGCCAATGATTTTAGTAATGG 1802741 32 100.0 34 ................................ CTTCAAAATTCCACGATGTTTTTATTTCTACCGG 1802807 32 87.5 0 ..........A............TT......A | ACA,A [1802828,1802836] ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.4 35 GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Left flank : TTTTAACCCAAGCATAATAACCGCTTCGAGATATATTTAATAGTCGGCACATCTTCTCAACAGGGAATTTGAAGCGGTATTCGTGAATGATAGGATATATTATTTCCGGTCTTTCGCGAAGATTGCCGTTACTTTTTTTAGTAATTCATTCTCCATCTCAAGGTCTGCAACACGCTTCTTAAGTTTCCTGAGTTCTTCATCTTCAGGTCTTAGATTGCCGCTACCTGGGAAAGCATTCTCTTTATGAGTTTTGTACTGGTCAATCCATTTGTATAGGGTGTTTTCGTGGATTCCAATGTCATTAGCCACACTTGATACACTTTTACCTTGCTCTGTAACAAGACGGACAGCTTGTTCTTTAAAATTACTATCATAACGTTTCATGATGGGTACCTCCAACTGGTTTTATTATACCAGCCATTCGGTGTGTCCATCAAATCGGGGTAAGGTCAGTGGATTGAAATAAAATCTCAACATCCTTACTATCGTGGTATATCCAG # Right flank : AGGCAATTTAAGGGCTAAACTAAAAAACTAATGATAAATCAATTTAATGAATATCTATAAGTTGTATAATCTTCCCTTTAACATGGAAATAATTAGAATAAATAATCATTTTCAATTAAGGGGTTTATTATGACAAAAAGGATAAAAACAATACTATTTATTTTTATGGCTATATTTTCTCTTTTGGTGACCAGACTATTTTATTTACAGGTTATTATGGGTCCCGGCTATTCGAATGAGGCATCCAGCCAGAGAATTAATAATATACAGATAGAAAATTCAAGGGGTGATTTCTTAGATAAAAACGGAATAAAGCTTACAGGAAGAACACCAAAAGTTACTGTAGTTTTAAAACCCTCTCTTCTTCGTGGACAAAATGAGGTTGTTGATAATATATGTCAGATATTAGGACTTGATTCCGAAAAAACTAAAGAAGCCATTCAAAGGAAGAATACACCTATATTAATGGAAGTTGACAGTGAAACAAAAACAGTTCTGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 3 3652924-3652357 **** Predicted by CRISPRDetect 2.4 *** >NC_011898.1 Ruminiclostridium cellulolyticum H10, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3652923 36 100.0 30 .................................... TTTCTGCCATTTAACGGCTTATAATAATTG 3652857 36 100.0 30 .................................... TAAACTAATCACTGTTAGCAACGTGTTACC 3652791 36 100.0 30 .................................... ATATATGATAATTTATAATATAGATAATAG 3652725 36 100.0 30 .................................... ATATATGATAATTTATAATATAGATAATAG 3652659 36 100.0 31 .................................... CTTATTGGTGAATATGATGCTTACAAATATA 3652592 36 100.0 31 .................................... CTTATTGGTGAATATGATGCTTACAAATATA 3652525 36 100.0 31 .................................... CTTATTGGTGAATATGATGCTTACAAATATA 3652458 36 100.0 30 .................................... GCATTCATATCATCGCTTGCTTATTTTTTA 3652392 36 94.4 0 ..................T.....C........... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 ATTATAGCATATCGGAGCCTGAATTGGAGCTATAAC # Left flank : GATTTCAAGTTTTTCAAGTTCTTGTGCAAAGAACGATTATAGTTTATTGAAATTACCTGAAATAATACCATTAGAGGTACATGCAAATGAGTGATATTTTAGGGAGAAATAGGTTTATGAGAATTCTTGTATTTTTTGATTTACCTGTTAAGAAAAAAATGGACCGAGACAACTACACAAAGTTCAGAAGAAATTTAATAAAAGATGGATTTTGCATGATCCAGTATTCGGTATACTGCAGGGTTTGCTCCTGCCCGGAAATGGCCGAAAAACATGTAAATAAAGTTAAGACTTTTTTACCTGCAAAAGGATCTGTGAGAGTTTTGACAGTAACGGACAGGCAGTATTCATCAATGATTATACTTCTTGGTAAAAAAACTTCGAATGAATGGATTGATAAAAAAATGATTGAAGGGCAAGGAATGTTAATATGAAACATTTATTTTTTTGCACAATAAAAGCTTTAAAATCCTGTGAAATCAAAGCTTTTATTGAATGGT # Right flank : TAAACATTAGGACTATAAATTTTATAACAAGACTTTAATAAGACTCTAACGAATAAAATATTATCGACAAAGAGAGAAAAAAGGGATATAATGGTGTAAAATGTAAACAGTGGTGATTGGTTGTATGCTAAAACCCAAATCGGATGTTTAATTTCCCACTTTACATTCATATTTGCTACCATATGACTAGCACTGATTATTAATATGAAATTCCTAAATATAGTTTTATTCGCTTTATCTGCAATTTTGACATTTCTATATGCACCTGCAGATCGGGTGTCAAAACCTATAGTTACTGAAAAAAGAAAACGGGAGTTAAGGATAAAGGGTAGTATATTATTAGTTATATGCTTTACAGTTACATTAATAGGTCCTAATATTTACTCAAATATCATTTCGGTGATAAAAAATAATATAAACTGTTAACATTACACCAATAGTGTATAAAATAACAAAAAAAGAGGGGTGGGATAATTACATGAAGGGAAAAATCAAATTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAGCATATCGGAGCCTGAATTGGAGCTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //