Array 1 12984-10369 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFFE01000002.1 Listeria monocytogenes strain 2842STDY5753911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12983 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 12917 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 12851 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 12785 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 12719 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 12653 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 12587 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 12521 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 12455 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 12389 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 12323 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 12257 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 12191 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 12124 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 12058 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 11992 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 11926 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 11860 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 11794 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 11728 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 11662 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 11596 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 11530 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 11464 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 11398 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 11332 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 11266 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 11200 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 11134 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 11068 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 11002 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 10936 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 10870 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 10804 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 10738 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 10672 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 10605 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 10539 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 10473 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 10407 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [10372,10375,10380] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1475424-1474095 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFFE01000001.1 Listeria monocytogenes strain 2842STDY5753911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1475423 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1475357 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1475292 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1475228 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1475162 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC TCA [1475148] 1475094 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1475029 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1474964 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1474898 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1474834 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1474769 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1474704 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1474639 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1474576 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1474513 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1474447 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1474384 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1474319 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1474253 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1474188 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1474124 29 93.1 0 .......................C....C | A [1474099] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //