Array 1 268271-267378 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKX01000001.1 Akkermansia muciniphila strain GP03 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 268270 36 100.0 30 .................................... ATGGCATCCATGTGTACGGCTATCAGCTTG 268204 36 100.0 30 .................................... ATATCGGCGGCGTCATAGTTAAGTCCCTCG 268138 36 100.0 30 .................................... CGATAGCCTTCATGCGGTCGTTGCATTTTG 268072 36 100.0 30 .................................... CCAAATGGTAGCAACCGCGGGGGCTGGTAA 268006 36 100.0 30 .................................... AAAGCCGATTGCCCTTCCATATTAGGCCGT 267940 36 100.0 30 .................................... AGTCATATATAGACTTAAGGTGCTTGGCGG 267874 36 100.0 30 .................................... CTACCGTTCCAAAATGAGAGTAACCTGCAT 267808 36 100.0 30 .................................... AATGCGAGCGTCAGGCCATTAACTCGCCTG 267742 36 100.0 30 .................................... ATACTTTTGTAGAGTGGTGTAATTATTCAA 267676 36 100.0 29 .................................... AAAACTATAGGTAAGGATCGCTTTTGGCT 267611 36 100.0 30 .................................... TAGGGGCTGTAGCAGCGAGCAAAGCGCTGG 267545 36 100.0 30 .................................... AAACGAACGCTACGGCGTTTGCCAATAACT 267479 36 100.0 30 .................................... TGTTCCCCCGTCGCCCTGTTCGGAAAGAAC 267413 36 94.4 0 .............................A.....T | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Left flank : TCTGTTATGCACCAGAACAAACAGATGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGGCAATCCGGACCGTATGAACCATGGCATATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAGTATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGTGTTACTCAGGAAAGAATAGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTTCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCT # Right flank : AAATACGCCTCCGGTTTGATGACGCAAGGTGGATGTCCGTCTTTGGCCGCGCAATTCCAGACGGATTTTTGTCAGTCTTTCTTTAACGGAGCGGGAGGAATGAAGCTGTACGTCCAGAACATGGCGCCGGTTGCGGAGGTGATTCCGTCCATGTTAAGATAACGGGCCAAAAGCAGGGAGGGGGAGGAGTGCCCCATCTCCTTCTGAAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGATAGGAGGCGTAGGTATGCCTCAGCACGTCCTGCACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAAACGGGACGGGAGGGGGAACCGGCGGAAGACGTCCGGCTGAGGATGGCGCCCAGCACGGGAAGGATGGAAACGTGGCGGCTCCCGCCTGTTTTGGTATGGCTGGGCGCCAGTGAAACCAGGCCGGATTTCAGGTTGATGTTCTTCCAGGTCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 336602-336368 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKX01000001.1 Akkermansia muciniphila strain GP03 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 336601 33 100.0 34 ................................. CGGTTCCTCACTTTCCGGACCAACTAAAAAGTAG 336534 33 100.0 34 ................................. AACGGATTCCGGGGATTCCGATTACACCGTAAAT 336467 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 336400 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 4 33 99.2 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTCCGCAAGGAGTGCGTGGATTGAAACCTTGGAACTGTTATTAAAGATGACGCCGCGGACCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACGAGGATGGTGCCGGAAACTTGAGCATGGTGTTTTAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCGGTGCATGGTGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGCATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCAACTGCCTCACCCCGTCCGAGTA # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 337430-336940 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKX01000001.1 Akkermansia muciniphila strain GP03 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 337429 31 100.0 34 ............................... GGTCTTCTCGGGGCGGACGCCTCCGTCGGCAAGC 337364 31 100.0 33 ............................... TTTTGTAAAATGACATAGTTCCCAGACATCTTC 337300 31 100.0 33 ............................... AAGGGCAAGGCAAAGCGGGTCAGAGATAAAGGC 337236 31 100.0 34 ............................... AGTTGTATGACAAAAGGCGCAACTCATTACTGCG 337171 31 100.0 33 ............................... TGGCGCAGGGTTTCGCGGATGGCCTGCTGCGCT 337107 31 90.3 34 .........CA.G.................. CTTGGAACTGTTATTAAAGATGACGCCGCGGACC GC [337097] 337040 31 90.3 35 .........CA.G.................. GAGGATGGTGCCGGAAACTTGAGCATGGTGTTTTA GC [337030] 336972 31 93.5 0 .........C..A.................. | G,G [336957,336962] ========== ====== ====== ====== =============================== =================================== ================== 8 31 96.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGGTTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : CCGGTGCATGGTGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGCATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCAACTGCCTCACCCCGTCCGAGTAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGGTTCCTCACTTTCCGGACCAACTAAAAAGTAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAACGGATTCCGGGGATTCCGATTACACCGTAAATGTCGCACTCCGCAAGGAGTGCGTGGATT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : CGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //