Array 1 6166-5467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSBM01000136.1 Caballeronia zhejiangensis strain CEIB S4-3 contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6165 28 100.0 33 ............................ CAAAGGGAGCGACGCCGCTCGCCCATTCCCAAA 6104 28 100.0 33 ............................ CCAGAGGCGCGACCCAATCAAGTGCAGCGGGTC 6043 28 100.0 33 ............................ CCTGTGCCGGGTGAAGGTCCGGTCTCTGTTCCC 5982 28 100.0 33 ............................ TCAACAGGGCTGCGTCAGGAAGCTGTTTCGGAG 5921 28 100.0 33 ............................ CTATGAAGCGATTATTGAAGGCTTTATCGAAAT 5860 28 100.0 33 ............................ TCTGGTTGCACTTGCGCGTCATCACGACTTGGC 5799 28 100.0 33 ............................ TTGCCGTATTCATACATCGGTTCAGGCCGCGCA 5738 28 100.0 33 ............................ GCCAGGTAAGGCTGCCGACGGTGCAACCCAGAA 5677 28 96.4 33 .....A...................... CTTTCCCGGCAAGACGACGCCGGCCGCAGTCGC 5616 28 96.4 33 ...........C................ GCGCAGGGAAGCCGATCCGGATCTCTTCGAAGC 5555 28 85.7 33 ...........T.A....C......C.. GTCGCCGACTCCCGGCTGCTGCACGATCAGATC 5494 28 71.4 0 .T.........C.AA......C.CCC.. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 95.8 33 GGTTCCTCCGCGCGCGCGGAGATAGACC # Left flank : GACTCGTGCGGCGCGAGGCGGCGCGCGTCTTTCGGAAGAAGGCTGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTGCTGCGTCTGGATGAGACGCTGGAGGACAACGATGGCGCTGGTCGTGGTGGTGACGTCTGACGTCGCGGACCGGTTTCGCGGGTTTCTGGCGTCGGTGATGCTGGAGGTGTCGGCGGGTGTCTATGTGGCGCCGCGCATGAACAAGGGCGTTCGCGAGAGAACGTGGTCGGTGCTTGCCGAGTGGCATGGACATGAGCCGCGCGGTAGCGTCGTGATGGTTTGGCGGGATTTGGATGCGGCCGGCGGCATCGGGATCGCGCATCTTGGTGAGCCGCCGCGCGAGCTTGTCGATGTTGATGGGATGTATGTCGTGCGGCGGATGTTGGCGGGGTAGGGGCGTTTTGTTCTTTGAAAATTGGGGAGGTGAGACTGGATCGGTTTGGGGGATTCCTCTTTGGGATCATGGTGTTACGAGGCAGA # Right flank : TCAAACCCCCACCAACCCCCCCACCACCTCCCGCGCCCGTTTCCCCCGCGCCACAAAATAAGCCGTCTCCGCCCGCCCCAACGCAGCAACGCCTCTAATCCGATCCGCAATCTTCTCCGCCAACATGATCGTCGGCGCATTGAGATTCCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAATCCTTCCATCCCATGCACGCGTCCTTCGCCGTCGACGACAGCCATATCGTCATAACCCATCTTGCACGAGCACGAAGGGTGAAAAGCCGTCTCCGCCTTCGCCCTCACGAACGCATCGAGTTCCGCATCGCTTTGCAGATCATCCGACGGATGCAACTCCCGCCCGCGATATCGCGCGAGCGCGGGCTGCCGCATGATCTCGCGCGTAATCCGAATGGCATCGCGAAACTCGCGCCAGTCGAGCGGATCGGCCATGTAGTTGAAAAGAATGCTCGGATGCGCGTTCGGATCGCGCGACTTGAGCTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGCGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 15266-15717 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSBM01000136.1 Caballeronia zhejiangensis strain CEIB S4-3 contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 15266 25 100.0 36 ......................... ACCTTTGAAGCGGCCCACCGTCCTTACCTTTTCGGC 15327 25 96.0 36 ........T................ ACCGTTGAAGCGCTTGATATTGTTGGATCAGTACCG 15388 25 100.0 36 ......................... ACCCTTCGATCCTCTTTTTGCCGCGCTCGGCATTCG 15449 25 100.0 36 ......................... ACCCTACGAAAAGCGCGCGCTGGAATTCGTCCGAGA 15510 25 100.0 36 ......................... GCCCGGATTCCGCGATCTGTGTTTACTCGCGCGAAA 15571 25 88.0 36 .......G.....G....A...... ACCCGACCTTACGAACCGCGCACGGCTCGATCTTCG 15632 25 80.0 36 T..........CCT..........T CCCCATGCCGAACAACTACGGCAAAAACATCAAAGT 15693 25 72.0 0 CA.........CC........C.TC | ========== ====== ====== ====== ========================= ==================================== ================== 8 25 92.0 36 GGTTCCTCCGCGTCCGCGGAGATAG # Left flank : CTTTACCAACGTCATGCAGATAAGTAAGCGCGGCAAGCCGCTCGATGTCCTGCTCGCTCAATGCTCGGCCAGCGGTCGACGTCAAAGCATCGCGGATTCGTCCGCACCGCGCAATTGCCATGAAACATGCGGCCACATCCAGCATGTGATCGCATAGCGGATGAAATGGCGAGTGCTCGTCGCCGTCGCGCGGCCGCTTGCCCCACGCGATGCAGGTATCGTTTTTGGTGGCCTCGGTTTGCATGTGCTGCCGATAAGTATTTTTTGCGCGTTCGTGATTTATTTTGGATACCTATCTTTTACGGAAGATTTGCTTCCGCCGCCATACGAATTGGCTTAATTCTTTGCTGCGCGACCGAACAGCGTTACCGCAGAACATTCCGTTCGAAAATCCGACGTTTGACAGCAGCAGGACTGATAGCCATACTCTCCGCGGCACGGTCGGTTCGAGACAACGAATCGGTCGTTTGTTTTTTCAAATCATGAAGATTGTGTGTAGA # Right flank : CAACTCCCCCCAAACCTCCCCCTAGCCGCCTCCACCACCCTAACCACCGCCTCCGCGCTCAACCGCGCCGCCACGACCCTCACATACTCATGATGCCTGGCCTCTAACGGCGCATCGAGATACTGCGCATGCAGATACCGAATCAACGCAATCCGCCGATGCTTCAGCGCGATACTTCGATCCAGCAGCTTAAGCGCCGCATCCGCATCATGCTTCTTGCATGCACGTTCGGAGAGCTGCGCAGCCGAATCACGCGACGCGTTCATCGCCGGACTACAGCCGCATCCCACGCATCGACGCGCGACCGCCAAGCATCGAAATCCGCCCGACGCCAGTCGAGTTCAAGCCCAAGCCGCTTCGTGCCCTCACGAATCTTCGGCTTGTGCAGCACCAAAGTAAGCGCATCCAGCGCCGGCCACTCTTCGAACGACAACGCGGCGATCTCCACCGCGAGCGTCTCCAGCAAGCGCGTATGCGCCTTCCCTTCAAGAAACGCGCTC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTCCGCGGAGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //