Array 1 5745-6812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXF01000139.1 Cryobacterium roopkundense strain RuG17 contig00139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5745 28 96.6 32 .......-..................... CTGATCGGCCTGTGCGATGACCGGACATCTGT 5805 29 100.0 32 ............................. GTCTTCGGAGCCACGTCATCCTCCGCCTGGGC 5866 29 100.0 32 ............................. GACATTGGCAGAATTCATTCCGGCCATAGTGG 5927 29 100.0 32 ............................. TCGTACCAGCCGGCATCAGCCACCGTGTTGCT 5988 29 100.0 32 ............................. CGGTGATCGACACTCAGGGCAACAACACAAAC 6049 29 100.0 32 ............................. TCGAGACTCATGCCGACAGCGTGGGCGGCATC 6110 29 100.0 32 ............................. TCAGGCAGGTACAGCCCCGTGGTGATGGAGCG 6171 29 96.6 32 ............T................ TGAAACCCGCCACCGTGGACCGGGCATCCATT 6232 29 100.0 32 ............................. GTCTGCGACACCCGGCCGGCGAGCATGATCAT 6293 29 93.1 32 ......GA..................... GGCTTCGACACCAGTGGGCTTGTGCAACTGAA 6354 29 100.0 32 ............................. CAAGCGCCCGTATTCGAGTCTCCGTTGTACAC 6415 29 100.0 32 ............................. ATCGAACCAGAACACGACCACGGCGCGCCTGA 6476 29 100.0 32 ............................. GCGTCTGGGCTCGCCCTGACCCTCGAAAACTC 6537 29 93.1 33 ........................G.A.. GACCCCACACCCGCATGCTCGCCGTCATGCCGC 6599 29 100.0 32 ............................. CGCCGGCCACCCTTCACCGCCCACTGGGTTAT C [6611] 6661 29 100.0 32 ............................. CCAGCGCACCGGACGGCACGAGGGAAGAATGA 6722 29 100.0 32 ............................. GATACCAAGCCGTGTGGGTGAACGGCGCGTGG 6783 29 100.0 0 ............................. | C [6790] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GGGAACACCCCCGCCTACGCGGGGAAGGG # Left flank : GGCAATGGCGAGTTCCTTTCCATCATGATCCAGAACCAGGCCGACACCGGCACCGTGACGTGCGAGATCGTCGTGGACGGAGCGACAGTCGCGCAAAACACAACGAGCGCTGCGTACGGAATAGCGAGCTGCGACTACGGGATCCCCTATTAGAACTGCACGATCGCCGGATCATATCAGGAGGCTGTCCGCGTCCACTTCTCGAGTCTTTGCCACCACGAAGGCACGCACCACTGCCACTGGTCCTCCACTCAAAGTTGTCAGGTAGACCCGCAGTGAGTGCGAGCGGAAACTTGACTACGACTGTCATACCGTCATTGGTCACATCAAACTCACCACCCTGAGTTCGGTCCCACCCTTCAGACGAGTCAGCGAGGTGCCATTTTGAGCCGTCACTAAGGAAAGCATTGAGGGTGACATAGCTGGTCTCAGATCCTGTTTCTCGCAGGGCGCCTACGCGGGGAGGGGGCCAACACCACTTCGGCGTACTGCCCTGCAAT # Right flank : TATGGTGTGGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAACACCCCCGCCTACGCGGGGAAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 675-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXF01000216.1 Cryobacterium roopkundense strain RuG17 contig00216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 674 29 96.6 32 G............................ TCATTATCGAATCGACCGGTGCCGTAGGCAAA G [658] 612 29 100.0 32 ............................. GAAGGCACCGTGTCGGTCTCGACAAGGATGCC 551 29 100.0 32 ............................. TGACAGACCATCCTGAGTCGCACGCAATTCGG 490 29 100.0 32 ............................. ACCAGATGTCCGGTCATCGCCCAGGCCGATCA 429 29 100.0 32 ............................. AATGCGGGTGACTGTGTAGGCATCAACGGCGG 368 29 100.0 32 ............................. GCCGTTGATTTGGCTATCTACGGTGGTCAGGA 307 29 100.0 32 ............................. GCGACGCGCTCACCTCCACTTGGGATGCTGTA 246 28 96.6 32 .................-........... ATTGCGATGTGCTCATGGATGAAGTGACCGGA 186 29 100.0 32 ............................. AGTGTGCACGGATTTGGAGATGCCCCGGACAC 125 29 100.0 32 ............................. GCCGTTGAGATGGTCGCGGGCATGACTCCCGA 64 29 96.6 0 ............................T | C [54] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 CCCTTCCCCGCGTAGGCGGGGGTGTTCCC # Left flank : TCCCTTAAATAACGAAGGCCCCCACATCATCTGG # Right flank : TTGTCGCGCTTGCCCGCCGACCATTCCTCGAAGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCGTAGGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 15074-15347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXF01000100.1 Cryobacterium roopkundense strain RuG17 contig00100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15074 29 100.0 32 ............................. TGCCGCCGACATCTTCAACGCCGTGGGCGAGG 15135 29 100.0 32 ............................. GTGGCAGACGGTTGTGTCGGGTGGGACTTCGC 15196 29 100.0 32 ............................. GCACTCGAGTTCGGACCGGACTGGGACGGCAA 15257 29 100.0 32 ............................. CTCGGCGGCTTCTGCGACCTGCTCAGTGGTCA 15318 29 100.0 0 ............................. | G [15335] ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CCCTTCCCCGCGTAGGCGGGGGTGTTCCC # Left flank : GGTGAGGTCAGTGATCACCCAACGACGCACCCTTGAAGACATGTTGACCATGACCATGCGGATACTCTCGCCACATCTCAGCGACATCGACGGCGACGTCTTGCTTGACGACATTGGAACGGTCGCCGGGCACACCAACTACGGGCAGCCGGAGGTGTGATCCGATGTTCGTCACTTTGCGAATCACCGCAGTTCCAGACCATCTCCGCGGATACCTCAGCAGGTTCCTTGTCGAATATGGCACTGGACTTTACGTGGGAAATGTGTCCAGACGAATCGTTGATTCTCTCTGGTCCCGAGTCACGGACGCCGCCGGAGAGGGCGAAATTGTGTTGGTGACAAGTGAAGCAACCAACGAACAAGGTTTCAAAGTCCGTCTCCATCAAGGCCGGGGCAAAGAAGTGGTCGACATGGATGGATTCGAGCTCCTTAGGAGCATTCCAGAAGGAGCATATTACGATTCGGAGCCTTTTCCAGATTAGAATCCCTGGTCAGGAAGT # Right flank : TCCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCGTAGGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //