Array 1 56-884 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWJ01000026.1 Streptococcus gordonii strain M5 Contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 56 36 100.0 30 .................................... TTAAGAATTTTATCATTATAGTAGGGATGC 122 36 100.0 30 .................................... GATAGTTGAAAGATTTACCATCACCACGAT 188 36 100.0 30 .................................... TCACGGTTATAATGATTGTATTTGTAGTCG 254 36 100.0 30 .................................... GCCTTCTTGAGCGTCACGCCGTCAGCCATG 320 36 100.0 30 .................................... TGGGTTAGCTAATCAATTCAAAAAGACAGT 386 36 100.0 30 .................................... GAAGGATATGCTAAACGCTTACAAGTTCAA 452 36 100.0 30 .................................... AGAATTTTGAACGATATCTCGAGAGTTGCT 518 36 100.0 30 .................................... AATGATGTAATAATATTAGCCCTATGCTTC 584 36 100.0 30 .................................... GGGTGTACCTGTTGATTCAATGCGTGTTGC 650 36 100.0 30 .................................... TTGTAACTTTGATGTCCTTCTTAGTCTTGT 716 36 100.0 30 .................................... CTAAAACGTACTTATCAAAATATCATATCT 782 36 100.0 31 .................................... ATGCAAAAGGGTTGTTAATCCACCCTGAACT 849 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GTGTTGTTTCGAATGGTTCCAAAACAGGGCCGTGGTACAATCCAACATATTTTCCG # Right flank : CAAGATACATCTGATTCCTGAGAGCCCCCTGTTTTAGAGCTGTGTTGTTTCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 620-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWJ01000019.1 Streptococcus gordonii strain M5 Contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 619 36 100.0 30 .................................... CACCTACTTTTTGACCCTGTAGATTTCTAA 553 36 100.0 30 .................................... GTAACCAAGTAAGCCTATTTTACCTGTTGT 487 36 100.0 30 .................................... TTTCGTAGTATTTCAGAATACTCCTTTTTA 421 36 100.0 31 .................................... ATTATCAAAAATTTCACTCACTCCCTTCTTT 354 36 100.0 30 .................................... ACCCCGTTGTTCCTGTTGCCTTTGTGGTGT 288 36 100.0 30 .................................... ATCCCGTTGTTCCTGTTGCTTTTGTTGTGT 222 36 100.0 30 .................................... ACACTCAGGGAAACGTATTAGAAACCATTG 156 36 100.0 30 .................................... TTGTCAAGCTCTTTAAACGCATACGCTGTG 90 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCAGAAGTCAAATCCATGATAGAAAAGCTGGTAGCTACGATTACAGAATTACTGGCATTCGAGTGTTTGGAAAACGAATTGGACTTGGAGTACGATGAAATTACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTTCTTGTTTTCATCAATGTATCCGCCTATCTATCGAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTAAATCAACTAAGGATTTTATTTGTCGAACCTCGAAAAGTCTATGATTTCCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CATCCACGGGAGCTGACCCTTTTAAAGCTGGGTTTTAGAGCTGTGTTGTTTCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //