Array 1 46964-47142 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXG02000020.1 Leptospira interrogans serovar Grippotyphosa str. Andaman ctg7180000004437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 46964 36 100.0 36 .................................... CAAATTTCCCACGCGTGGGAAATTTGGCTCATTCGA 47036 36 97.2 35 ............................C....... CAAATGTAAACTCAGATTTACATTTGATTGAAGCG 47107 36 94.4 0 ......................A.....A....... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 97.2 36 GTTTCTTTCTCTTATTCAAGAGGAAGTGGATTGAAA # Left flank : ATAGAGAACTTCCCCAATTGTTCTTAAAACTAAAAACTTTGTAAATGTTTACTGTTAAGTCGGATTGTTTGTTGAGTTTAGATTCAATTGTTTGTGAATTGATCTCTTTTAAAATCTCTAAAAGTTGTACAAACCAAAACACGTTTGTTAAAAATTTTAATTTGAGATGACTTCTAAAAAATTCTTTTGTTCCTTTTCCAAAAATTTCAGTTAGACGAACTTTGCCTCATGGATAGTCAGTCTTTCATCAATCTATCCTAAAACCCTGTTATAAGTTTGTCTTTGATAAGCCGATCTTTTAGAATGAATTGTTTTTTGCGAACCTGTTTCTCCCGGTAAATTACGGACCTTTCGCGCTCTTGCATGGATTCGTTGTTTGGCGATGTAACGGTTCCGCTTAACAATTGTGTAATATGGTAAAAATAGGTTCGCGATTATTATGTTTAGAAAGCTTAATAGAGCATTTTATAATACATTATTTTCAACCCTATTGAGCCGCC # Right flank : ATGTCGGTAAAGTGGCCAAAGGCGAAATGGAAGTTCGTTTTTTCCTCTTACTCAACATGAGTTCCTACAATTTCAGAATTTGTTCGTAAAATTGTGATTTGCAGTAGTTCCCACATCATTTTATAGAGGCTTTGTGGTAGTTCCCACAAATCAGAGCTTGTCCCAAAACCTCAAAGAATTTTACGCAATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGCTCCTAGAGATAAGTTCTCATTTGGCAATTTGCGAGCTTTCGAGTAGTTCTAATGTCGTTCCATTTTCGTAGTAGTTCCCACAAATTAAGTCACATTGTGAATATAGGTTTTAAATTCAATTTTTGTAAAGTTTTTCGAACTAAAAAGTTTTACTGATTTTTATAAAATTAAATACCGTGAATTTTTATCCTAAAACCCTGTTATACGGTTTTGAATGGATCTTATTCTAGAAAAATCATACATCTAAATCACGTTTACTTTCATTTAAATACAATGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTATTCAAGAGGAAGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 550-222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXG02000015.1 Leptospira interrogans serovar Grippotyphosa str. Andaman ctg7180000004433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 549 37 100.0 36 ..................................... AAAAGAAAACTAACAACTGGTGGATTTTAGTTCTTC 476 37 100.0 37 ..................................... ATAGGATTGTTGCAATCAATGCAGTTTGTGACGACGG 402 37 100.0 35 ..................................... GACTATCTCAAGTTGCAAAGGATGAGTTTTTTGAA 330 37 100.0 35 ..................................... GACTATCTCAAGTTGCAAAGGATGAGTTTTTTGAA 258 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACA # Left flank : AATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATTGATTGCCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : CTAGAGTGGCGTGAATTTTTGCATGAGTTGACCCTTTAACCTAGTGACGAATTATTGGACACATTTTTACGCAGCATTTACTTCAAATTGCACAGGACTCACAAAGTCTAATGACGAATGAGATCTGTGTCTATTATAATAAACTTCTATATGATCAAAAAGTAATTCTTCGGCTTCTTGAATTTTATAAAAGTAATTATATTCCATTTCTCTTTTCAGTAG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //