Array 1 2281839-2283427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029089.1 Pseudomonas aeruginosa strain AR444 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2281839 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 2281899 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 2281959 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 2282019 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 2282079 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 2282139 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 2282199 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 2282259 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 2282319 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 2282379 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 2282439 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 2282499 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 2282559 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 2282619 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 2282679 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 2282739 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 2282799 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 2282859 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 2282920 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 2282980 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 2283040 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 2283100 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 2283160 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 2283220 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2283280 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2283340 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2283400 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2293358-2291953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029089.1 Pseudomonas aeruginosa strain AR444 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2293357 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 2293297 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 2293237 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 2293177 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 2293117 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 2293057 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 2292997 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 2292937 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 2292877 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 2292816 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 2292756 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 2292696 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 2292636 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 2292576 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 2292516 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 2292456 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 2292400 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 2292340 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 2292280 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 2292220 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 2292160 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 2292100 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2292040 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2291980 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3806855-3805927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029089.1 Pseudomonas aeruginosa strain AR444 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3806854 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 3806794 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 3806734 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 3806674 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 3806614 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 3806554 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 3806494 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 3806434 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 3806374 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 3806314 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 3806254 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 3806194 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 3806134 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 3806074 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 3806014 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 3805954 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //