Array 1 28955-29925 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHN01000001.1 Riemerella anatipestifer strain CCUG18373 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28955 47 100.0 30 ............................................... TTCTTAATTGTAATGCTTTAGAAAGTAGTT 29032 47 100.0 30 ............................................... TATCCCATCGCACATCTGTTTTATTTTGTC 29109 47 100.0 30 ............................................... TTTATTAAATAATTTAATTAGCTGAAAATC 29186 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29263 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29340 47 100.0 30 ............................................... TTTCAAGGCTTCCATATAGTTATTCATTGC 29417 47 100.0 30 ............................................... CACAGGCAGCTCTTGAAAGCGGATGGGGGA 29494 47 100.0 30 ............................................... TACACCGAACAAACTATAAATAAACATTTA 29571 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29648 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 29725 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 29802 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 29879 47 91.5 0 ........T...............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 307318-306241 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHN01000003.1 Riemerella anatipestifer strain CCUG18373 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 307317 36 72.2 81 ...................TGCTAT...T..A.G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 307200 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 307134 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 307068 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 307002 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 306936 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 306870 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 306804 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 306738 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 306672 36 100.0 30 .................................... TAAGAACTTTGTAGATGAAAGTGGTAATCT 306606 36 97.2 30 ...................C................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 306540 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 306474 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 306408 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 306341 36 100.0 29 .................................... TTAGGAGCAAATAAGCTGTATTTATTGGT 306276 36 66.7 0 ...................TGCT.T...T.ATTGTT | ========== ====== ====== ====== ==================================== ================================================================================= ================== 16 36 94.6 33 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : ACCTAGCAGATGACGGTAAACTAAACGGGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATATGTTGTTAATACCCTTCAAATGCTACGCATTCACGAACTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAAGTTGTGAATACCCTTCAAATGTTATGCATTCACGAACTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAAGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC # Right flank : ATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCTT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //