Array 1 1093823-1094987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072548.1 Aggregatibacter sp. 2125159857 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1093823 32 87.5 34 T...........AG.......C.......... ATACACTAACGCGCCCCACAACTCCCCGCCCGTC 1093889 32 87.5 35 C...........AG.......C.......... GTCGGAGCGTCAGAAATTTTTCTAACGCAACCTAA 1093956 32 84.4 37 AA..........AG.......C.......... TTTTACCACTTTGTGGCTGATGGTCGCTGTTTTAAGG 1094025 32 93.8 35 ........T..............C........ TCTTGCTTCCGGAGATAAATCACCCACAAAATCAT 1094092 32 96.9 34 .............T.................. AAGTTTTAATTTTAAACCGTGTTGCTTTGCGATT 1094158 32 96.9 33 .............T.................. TGAAAAAGTGATTGTTTTCATAATTTAATTTCC 1094223 32 100.0 35 ................................ CGCCCAGCTAAACGCGTTGGTTTAGGTGACTTTGG 1094290 32 96.9 36 .............G.................. AGGAGAGACATTATGTCTAACTTAACCGTTCTTAAA 1094358 32 96.9 35 ............A................... CGTTTCTAACTTTTTAGATTCTTTTTGTGCCTTTT 1094425 32 87.5 34 ............AT....G...........G. TTAAAGACTGATATTCGTCAATATGTGATTTTTC 1094491 32 96.9 33 .............G.................. GTAAACTCGTGATCGTATAACGCCTTACAGAAG 1094556 32 100.0 36 ................................ CATCTTGTCCAGAATGCCGATCACTATGTCGTGATT 1094624 32 90.6 34 ......A......G.T................ CACCTCGTTTTTGATCGTCTCTAATTCTTCCGGC 1094690 32 90.6 34 ......A......G.T................ TCGTATTAATTGGTTGGATTTTGCCAACGAATCG 1094756 32 87.5 34 ......A......G.T...............T GTGGGGTGATAGTGATATTGTTACCATTACGATG 1094822 32 90.6 34 ......A....T.G.................. AGTAATTCGATATTTTTTGCGAGTTGGGAATCGC 1094888 32 100.0 36 ................................ AAGCGGTCGATAAAAAATGGGTCATTATAGAAAAAA 1094956 32 87.5 0 ....A.A......G.T................ | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 92.9 35 GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC # Left flank : GCACATGGGAATACAAAATGCTGATGTTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGACGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCTGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAGACCGACAGCTTGCGCTTTTACCATCTGGGTAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCTAACCTACGATTCTCATGAAAACGTAGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATTTGGGTGTAACAGAAAAGGCTGTGTTATACTCGTGCTCGCGCTTTTCTTGGGAGCTTAGTGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTTGAGAGAGGC # Right flank : CTACGAGTATCTTGCCGAGGTGCTGAAAGCTGCCTATAGCTGCCTCTGTACGGCTGTGAGTGGTTTTCGTGCAACAAGTTGCACGCTACGGGGATGGTGCATTAAGGTATTATATTTTTGTGAAATGAGTGGAGGGGAGAGTAAAGTGCGGTCATTTTTTGTATTATTTTTTATCCTTCGTATTCAAAATTTCTAGCAACAAAAATTTATAGTAACAATCCACCGCACTTTTTCATGTGTCCTTTTTAAAATTGTCTTTAAAAAATAAAAAGCAATCGTTTGCGCAAGTGCTGAAAATCCACTAAAATTTCGACCCTATTATTCTCTTATCACTTTCCCTTTCTAAGGATCCTCTCATGGAACATGAACAACAAACTGCGGAAGCGGATTTGGTCTATTGTTTAGAAGACAAACCGCCTTTTTTTAATGCTTTAATCAGTGCCATTACACATCTATTGGCGATTTTCGTCCCCATGGTCACGCCTGCGCTTATCGTAGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.40,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1326467-1324432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072548.1 Aggregatibacter sp. 2125159857 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1326466 32 100.0 34 ................................ TTTGATGTTACGCCTTACGCTTTAAACACGTTTG 1326400 32 100.0 34 ................................ AGTTTTACCCCATCTACTAGGATTGCCATCAACG 1326334 32 100.0 34 ................................ TGATTGTTATGTCATTAACTAACGAACAAATCAT 1326268 32 100.0 34 ................................ TAGCTTGTCAACATTTAATTTTAATATTTTTGAA 1326202 32 100.0 34 ................................ ATTAAGTGGCGTTTTTACACTCACAATCCCTGCT 1326136 32 100.0 34 ................................ CTTTCAATACTATATACACCCCACCTTTTATTGC 1326070 32 100.0 35 ................................ CATCGATAATCACCAAACCTTGCGTGCCTTTGAGG 1326003 32 100.0 33 ................................ CATTTTGCTGGCGTAGCGATTGAGTCCTGTTTT 1325938 32 100.0 34 ................................ TCTCTAGGCTTGCCGACATTTACTCGTTGCACGG 1325872 32 100.0 35 ................................ ATATTGCCAAAGTAACGATTAACAAACTCCTCAAA 1325805 32 100.0 34 ................................ GATCGAATTGTGTTGACTGTGCAAGTTGTTGCAA 1325739 32 100.0 34 ................................ CCCTTTACGAACCATGGTGAGCAAGATAAATTTC 1325673 32 100.0 35 ................................ ATGCGCTTCATTGCGCGCATAATCAAGCGTGATTT 1325606 32 100.0 35 ................................ TATTAATGTTACACCTGAGGAAATTATACCGTCGT 1325539 32 100.0 36 ................................ ACCGATTTTCCCACAAAAATCTCAAAACTCTTAACG 1325471 32 100.0 35 ................................ TGAGATAAGTTACAAATACTCACCTTGCTTTCTGG 1325404 32 100.0 34 ................................ TAGTTTTTATTGACTAGTTAAACCCAAAAACATT 1325338 32 100.0 36 ................................ ACAGCGGCGGTATTGGCGCCAAGTGTTACTGTTGCG 1325270 32 100.0 37 ................................ ATTTTAGCCCTCGAGGAAGGCATACAGATGTTTAACG 1325201 32 100.0 35 ................................ ACAGGTATTTACGACCAAGATGAGGCAGAACGCAT 1325134 32 100.0 34 ................................ AACAGATCAGGTAACAAAGGAACTACAGTAGAAA 1325068 32 100.0 36 ................................ TTTTGTTGACCCTTGGGCGGCTCTATGCCGAAAGTG 1325000 32 100.0 33 ................................ TGCCAGCAACGGTCGATCACTTCTTGGCAACGG 1324935 32 100.0 35 ................................ AGCACCATAACAGATAGCGTAACCATAGCCTAATT 1324868 32 100.0 35 ................................ ACTATACCCAAGGATCACAAAATCACAACACGGCA 1324801 32 100.0 34 ................................ TAAAGAACGTTTACAAGTAATGGCGATTGCCTTT 1324735 32 93.8 35 C............C.................. TTCGCTATTTCAGCTTTTGTTTTTTGCTGCTTGAT 1324668 32 93.8 34 C............C.................. TAATTGTCAACACTTCTTTATTAAAAAGTTTAAT 1324602 32 93.8 38 C............C.................. TTTTTTGATCGCCCCCCAAACAAGGCTAAAGGCGTTAA 1324532 32 90.6 37 C............C.............T.... CTTAGAATCAATGCCGAATTTATTCTTAGTTTTGTCG 1324463 32 87.5 0 C............T......T..........T | ========== ====== ====== ====== ================================ ====================================== ================== 31 32 98.7 35 GCAGCCGCCTTCGAGCGGCTGTGTGTTGAAAC # Left flank : TGATGAGATAAGCTATGTTAATGCTGATTACTTATGATATTTCTTTTGATGATCCAAACGGGCAAGCGCGATTACGCCGTATTGCAAAACATTGCTTAGATTACGGCGTACGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACGTGCGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGATGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATGCAATGTTTAATCCGCTGATTTTTCTTGCTTTTTTAGGTAGGGGG # Right flank : ACGCCTATCATTTCGGCGTATAAATGGATTGGCGCCACTTTCTCGCGTTCTGTGAGCCATGTTTTCGTGCAACAAGTTGCACGCTACGAGGGATATTACATTTTCTAAGTCTTGCGTTGTCAGTTGTGTTTAAACATTTTAAAATCGTTTTGCTTGAGTTCAAGGTTAGTGTTGAATTTAATCTTGAATGTGAACGTGAGATTATTTGCCATGAGGAGATCTTTATGGAGAAAGAAACAGATATCCATTGGATTGGTTGGGTGATTGCACTGTTACCGTATGAAATCGGTTTGTTGTTTATGTTGTTTGGTTCAGCGACATTGATTCAGGTGGTGTTTTTCGGCACATTTTCGTACCTTGTCATCCTTGGTGTTATTGCTTTCTTCCGCAATCCTAAAGATGTCATACTGCTTTTGATTATCGGCTCAAAACTTTAAAAGTTGACCGCACTTTAAGATGCGCTGAGTACCGTATGATGAGTGTGATATTGTTGTGCGATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGAGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //