Array 1 5920-3732 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHKO01000035.1 Vibrio hibernica strain B1.19 35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5919 28 100.0 32 ............................ AAGGTATTTCTAATTCTGCTGTTCGAGGCTTT 5859 28 100.0 32 ............................ AACGTCTAATGTTAACCAAGAACTACAAGCTT 5799 28 100.0 32 ............................ AGAGAAAGTAGATCACTCGCTCATCTTAAAAA 5739 28 100.0 32 ............................ CTCTTGCTACAACTGCGCTATTACCTGTTACT 5679 28 100.0 32 ............................ AATAGGGATACCGTTAGTTATAGACAATGTAA 5619 28 100.0 32 ............................ TTGTTCATTGACTATATCAAACAATGGAAAAC 5559 28 100.0 32 ............................ ATTATAAATAGCTCATCTATATGTGCATATCA 5499 28 100.0 32 ............................ GCATCTATCGGTTGTAAGGTTGCGGATCAACT 5439 28 100.0 32 ............................ AAGCGGTCAAAATAGGAATAAACGCGATTGCT 5379 28 100.0 32 ............................ GGTCAAAAAATACCGTGGGCGATCGTGCTTCA 5319 28 100.0 32 ............................ TGTTGGGCTGTACGAGTGCGAGAAAGCTAAAT 5259 28 100.0 32 ............................ ATCATCACTAGTAACATAATCCCGTAATGCCA 5199 28 100.0 32 ............................ ACGGAAGTTCGAGCGTGAAACATCGGAACTGA 5139 28 100.0 32 ............................ AAGCACCACAGTGAAATTGCGGCCCATTGCGC 5079 28 100.0 32 ............................ TGTTAACTCAATAAGGCGATCAATATGTTTAT 5019 28 100.0 32 ............................ ATCGTCATCCACGGTTATCGACGCGGGAGTTG 4959 28 100.0 32 ............................ ATCAAGCAGGGTTGCATCTGAGTACGCCCATA 4899 28 100.0 32 ............................ AATAAGGAAAAACAAAAATGCTAAATTTCAAC 4839 28 100.0 32 ............................ AAGGCGAGCACCATTATCGAGTAAAGCTATTT 4779 28 100.0 32 ............................ TAAATCTGACAATTGCAAACCTATGATGAACC 4719 28 100.0 32 ............................ AATATAGAATTGGTTTGGTCTTGCAGCCATGT 4659 28 100.0 32 ............................ GTGATTAGTTATGACACTTCGGTACTGCATCA 4599 28 100.0 32 ............................ TAGGCACGATTCAACAACAAATGTCAAAGGTG 4539 28 100.0 32 ............................ CTGCTAGCGCTTCAATGGGTTTAAACTTGCAA 4479 28 100.0 32 ............................ ATAACGTCAATGTCACCAGAGCCAAACGATTC 4419 28 100.0 32 ............................ TGTCGCAATATCTTAAACCTCGACCACCATAG 4359 28 100.0 32 ............................ TCATACTTATCAAATAAGTCATAGCTTTCATC 4299 28 100.0 32 ............................ ATTAACATTGTTGATAACAACAAATGCGAGGT 4239 28 100.0 32 ............................ AAACAGCGGCTACCACAGCTCAAGAAGCAGCG 4179 28 100.0 32 ............................ GCCAACCCCTTTGCTTGATCTGGCTTTACTTT 4119 28 100.0 32 ............................ GCTTTTGGAAAGTGTTTGCAGCAGCCGATAAG 4059 28 100.0 32 ............................ TTCATTATCAACCGTTAACGTTATTTATAACC 3999 28 100.0 32 ............................ TAAGAAGCATATAGGCGTTGTTATTTATGGTT 3939 28 100.0 32 ............................ CACATTGGCTCTAATGGTATAATGGAGTCCCA 3879 28 100.0 32 ............................ TGTCATTAATAAGCGATACACATATCAAATCG 3819 28 100.0 32 ............................ TCAAGCGTCTGGTCTCTTAGCTTTTTCATCCA 3759 27 75.0 0 .................T..-.G.TCTC | T [3740] ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.3 32 CTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAGCAATTAAATATCGCTAAGTGGTTGGCTCGTTTTACTGATTATCTTCATGTGTCAAGTATTCGCCCTGTGCCAGATAACGTGGTAAAGCAAGTGAGTTACTCAAGGCCAAAAGTACGGACTAGCAAAGATCGAGAAATCAGACGTCGAATGAAAAGACACAATGAAACCTTAGATCAAGCGACGGTTCACTTTTCAGGATTTAAAATACGTACCACGAAAGCGCCATTTGTTTACATGCAAAGCTATACCAAAGGGACACGTTTCCCTTTGTTTATTTGTGAGAATGAGATTGAAGTTACTCCGGAGAATATGGTTACTTTTGATAGTTATGGGTTATCTAGCCAAGGATGTTTACCCAAGTTTTAACCTTTAATTTTAGGTCTTTAACAATTTCAAATAAAAACAATAGGTTACAATGAACTTTTTTGAGAAGGTAAAATAAACCTTTTTAACGTAAGCACTTGTTGTAACTTATTTTTATGTTGTTAGTCTACT # Right flank : TTAAACCATGGTGATGAAGAGGCTTTTCACAAAACTCTTTACTTAAACATTAGTCGTGAGTAATATGATTCATATTACTAAACACTAATGTGAATTATATGAACGATAAACTACAGTCTGAAATGAAATTTCTCCGAGGTGTCGCGGAAAGAAATCGCCTGTGTATTCTCCTATCGCTAAAGGATGGTGAAAAAATAGTAGGTGAGATCACGGAACTTACCGCCAGTTCTCAATCCAATATTTCACAACATCTGGCTTGTCTGAAAGGATGCGGGATGATTAAACGTCGTCAAGAAGGCAAGTATTGCTACTACAGCCTTTCGGGTTCGTATATGTTGGATTTCTTAAACATGCTTGATGTGCTGATGGATAAGATTGGAACAGACGTAAGCTGCTGCGAGTTGGATACAGCACTCATTTCGAGAGAATTTAATGAATAATAAAAATAGTGATACACAAACCTGTTGTGAAGAGAGAATATCGCAGCCCTCTGCTGACCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10869-11016 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHKO01000066.1 Vibrio hibernica strain B1.19 66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10869 28 100.0 32 ............................ TATATTACTTTTCCGTATTACAGAGGGCAAGG 10929 28 100.0 32 ............................ TAAGTATGCACACCACAGATTATCTTTCGTTT 10989 28 92.9 0 ....T......................T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTGACCTGCCGAATAGGCAGCTAAGAAA # Left flank : TTTCAATGATGAAAGAAGAAGGTTTATTTCAAATTTCAGCTATTTTGCCAGTAGATAAAGAAACTAAAGAAGTTCGATTCATTCGTAATCAAGCTATTGGTAAAAGCTTTTTGGGTTCTAAAAAAAGAAGAATGAAAAGAGCCCAATTAAGGGTAAGAAAGTTGGATTTTATTGCTATCCCTAAAGTGAATGAGGAACGAGTTTTTGGCAGCTTCCATCGTATCGCACTTTCTAGTCAATCGACTCAACAAGACATTGTGTTGCATATTCAAAAGCAAGAATGTGATGAGATTACGTTAAATCATTTTAATTCATACGGCCTAGCAACAAATCAAGCATGGCAAGGGACGGTGCCAGATTTAAAAAATACGATGTTGTAATGCTGTAAAATTTAATGGATTAAAAACAATAAGATATTTGATGCAGTGAAATAAAAGGTATTCTTTAACTAATGATATGCAATTGCTTGAAAGTAAATAGAGTCATGTCTAAGTTTTATA # Right flank : TAGGGCTGGAAGTTAGCATCCACACCTGCTGATAAGCAGTAAAACATATACAAAATCCACTAGACATATTCTTTGTTTAGTGGGTTTTTGCTAAGCTAAGTTTCTCATTATACTTCGGTGTAGATTTGCTGCTCATCGTAATTTTAGTAAGTCATTATGGCCTAAATTCTTGTAATGAGATAAACCTGAAAAAAATCCTGCAATTTCGGTACGAGTAAATATATGAGAGTTAAAATTGAACAGAACGAAAATGGTGAATACTATTTTTTAATTCCCGATGAGTTACAAGAAAACCTGTCTTGGAATGAAGGAGATCACATGGAATGGATCGATAATGGGGATGGTAGTTTGACGTTAAAGAAGCTCAGTCAGTTGGAAGCATTAAAAATCAAAGCGTTTGAAGAGCCTGACGTGAAAGCTGAGTATGGTCAATTGAAAGATGATTCTGAGTTTGACCTTTAGTTAAACTATTCTAGTTGTAGTTAAATTACCAAAGCAAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGAATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //