Array 1 111252-111017 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPWG01000001.1 Enterococcus faecalis strain TV126 NODE_1_length_944974_cov_37.1181_ID_2077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 111251 37 97.3 29 ....................................T ATAACGTAAATCACAGTCTTTTGTAAGTC 111185 37 97.3 29 ....................................G AAACCTTTTTTTGCGTTTGATATTTCTGT 111119 37 100.0 29 ..................................... TTGAATCTGGCCAGCTGGCGCTAATTGTT 111053 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.0 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Left flank : TTCTCGCCAATGTTACAATATCAAACATATTATTTCCTCCCTGATTTGCCTCCACACAAAGAAACAAGCTTACCTGAATTGTTCATTTCCATTAGCGATGACTCCTTTTATCTACGAAACTAAAAGAAAATTCAAGTGAACTTTTCCAAAAAGTGTGAAAATGCATGTAATATAGAATAATTCCAATCTAAGTATACAACTTTCTGAGGCAGAAACCAAACAATACAGAAGCATTTCTCACAATTTTTTTAGGTGCTACCAAGATTTCTTCCCGTTCTTCTATCAATAAAAAAAGCCCTTCCTAAAAAAAGGAAGAACTAATCTCAATCTATCAACATTTTGACTTATCACTTGATTAGTTTTCGAAAATTGAAGCAGCTCGTCTTTGATGATAAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGAGGTGATAGTTTGTTTTTTAACAACATGGCTCTAAAACAGGGGAGAAAAAGCCAAATCAAAAAAGTTT # Right flank : TCGGAGAATTATTTTTTCTCCATGATTCCGTAGTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAAGGTCTAATTTTTTTCTTCACGTTTATTATACCAAACTTTTTCCTTCTTGGCGGAAAAACCCACCATTTTTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTATACTTAGCTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGTAACCAGATGAAGGCAACCATTCAGAGAATATCCTTGCCCAGGTTTCTTGTAAAGTTTGTGGGAAAGGACCTTCATTTGGAAAAACCGCCCATGTATGAGCAGGTACGCTTAGTTGCTCCAAATCTTCATAGGTATTTTCTTGCAAAGTGGCAAAGCCAATCATGTGTGTCATTTCTCCACCCTCTGTTGTTCGTCCCTCTTGAAAGTCAAAAGAAGCATTTACTACTTGATGAGGATATACAT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 318461-319683 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPWG01000001.1 Enterococcus faecalis strain TV126 NODE_1_length_944974_cov_37.1181_ID_2077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 318461 36 100.0 30 .................................... TTGAAACACATAATCATTAACCGCTTTTTG 318527 36 97.2 30 ......A............................. AAAATTCTTCTAACGTTTGCGCTGAAATAT 318593 36 100.0 30 .................................... TGTTTATTCTGCGGTTTCTCGCCAAAATAA 318659 36 100.0 30 .................................... CACTTCATATACCTTCTAAACGAGTTATTA 318725 36 100.0 30 .................................... GGATGTACCAGTTATTCTTGGTCTTTCAAA 318791 36 100.0 30 .................................... TGTTCCTCTTGATGGTGCTGACGGCAACCA 318857 36 100.0 29 .................................... TGTCTCTTTGATGGCTTCCTTTTTAACCA 318922 36 100.0 30 .................................... AAAAACCAGATTTAGAAACTATTAAAGATA 318988 36 100.0 30 .................................... GCTTTTTCTCCTGCAAACTCTTCGATCTGA 319054 36 100.0 30 .................................... CAACTAGTTCAGTAATTTCGCCTTCACTTT 319120 36 100.0 30 .................................... AAATCAAGAGAAAGAACGGCTTCTTAGAGA 319186 36 100.0 30 .................................... AGTTCGCTTATTCCCATCATGGCACAGACC 319252 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 319318 36 100.0 30 .................................... TGGAACATGAGAGTGGTTTAAACCCTGCTA 319384 36 100.0 30 .................................... GCACCTAGAACGACGTCAATCGGTTGGTTG 319450 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 319516 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 319582 36 100.0 30 .................................... ACGTGTCGTCGTAAGTTGTTGCAGTCCATG 319648 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CAATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //