Array 1 242279-240786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQRU010000003.1 Salmonella enterica subsp. diarizonae strain 3198 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242278 29 100.0 32 ............................. TTTAACCAGTTACTGGCCTCCAGAAAACTGAC 242217 29 100.0 32 ............................. AACGAACAATCGAATTTGTCATTGGTAGATTT 242156 29 100.0 32 ............................. CGTGCAGACCGATAATGTCGCCGCCCTGAAAC 242095 29 100.0 32 ............................. CCGGCAGTACTGGCGTTCACCACGCAATTTTT 242034 29 100.0 32 ............................. ACTTCACCATCCAGACCACCGACCTGATACAG 241973 29 100.0 32 ............................. CGGTCAGGAGAACTAACAATAAGAGGAAAACT 241912 29 100.0 32 ............................. AGAATCGGCACCGTCCAGCCAAACTCTTCAAT 241851 29 100.0 32 ............................. CTGATACGCCCACGGACAAAAGCGACGTGATC 241790 29 100.0 32 ............................. GATACCGTACCAGGTGATTACGATGTGAAGGT 241729 29 100.0 32 ............................. GCAATTTCCGGCGATCCACTAACGGAGGAGCA 241668 29 100.0 32 ............................. GTTGCTACATGTACGAGGCAGTGCGCGGCATT 241607 29 100.0 32 ............................. CCACTCGCGAGCGGGCACGTCAGGCGGAAGAA 241546 29 100.0 32 ............................. CTGATGGACTTCACCGCATATTTCACCCAACC 241485 29 100.0 32 ............................. GATAAATCATAAATAACCTTCTCTTTTCCAGA 241424 29 100.0 32 ............................. ATTTCCAGGACTTCGGCAAGGGCCAGCCCTTC 241363 29 100.0 32 ............................. CAGGGCTACGAAAACCTTGTATCGACGATTAA 241302 29 100.0 32 ............................. CGTAATGCCGAGACATCCTGGCGCCGAGATAA 241241 29 100.0 32 ............................. GCGCGTTGATAGGTATTGTTCTGGGTATTGGT 241180 29 100.0 32 ............................. CGACCTTCATTGATGTAAACGACACCATCTCC 241119 29 100.0 32 ............................. TTTACCGCCGCTCAGCTTCGTACCCTGGTAGA 241058 29 100.0 32 ............................. GCTTACATTGAGATTCCTTTGTTTGTCGTGGG 240997 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 240936 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 240875 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 240814 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //