Array 1 4218534-4216630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085987.1 Salmonella enterica strain SZL 38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4218533 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 4218472 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 4218411 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 4218350 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 4218289 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 4218228 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 4218167 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 4218105 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 4218044 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 4217983 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4217922 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4217861 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4217800 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4217739 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4217678 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4217617 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4217556 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4217495 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4217434 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4217373 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4217311 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4217208 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4217147 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4217086 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4217025 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 4216964 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 4216903 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 4216842 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4216781 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4216720 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4216659 29 96.6 0 A............................ | A [4216632] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4236158-4234665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085987.1 Salmonella enterica strain SZL 38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4236157 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 4236096 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 4236035 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4235974 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 4235913 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 4235852 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4235791 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4235730 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4235669 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4235608 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4235547 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 4235486 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 4235425 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 4235364 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 4235303 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 4235242 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 4235180 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 4235119 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 4235058 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4234997 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4234936 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4234875 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4234814 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4234753 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4234692 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //