Array 1 132181-133819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930368.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 132181 37 100.0 38 ..................................... AAAGAAATAGAGTTTTAAGAAATAGCCCTCACGTGAGG 132256 37 100.0 35 ..................................... AACCAAATTACACGCCTACGGGCGTTTTTTTATGA 132328 37 100.0 35 ..................................... AGTGGAAATAGGAATAACACCTAAAAGAGCAAATG 132400 37 100.0 37 ..................................... CAATCACTTGAATGACCTTTGTATTTCTTTCCTCAAT 132474 37 100.0 35 ..................................... AGGGAATTATCAAAGGAATTATTTGGAGAAGTCCC 132546 37 100.0 40 ..................................... AGGGATGGTGTTCTAACTGACTGCTGCTTCTGCGCCATTG 132623 37 100.0 33 ..................................... GAGCTTGTCTTAAATAGTCATTGGAAGAGTTTT 132693 37 100.0 35 ..................................... TTTCAACTTCTTCAATATTGCTAGATACTCTAGAA 132765 37 100.0 34 ..................................... ATATACTACTGATGCGCCTGTTTGCCTACCCTTT 132836 37 100.0 34 ..................................... TAATTTTAGGCAAAATAAAAACCCCTCTAGTTGA 132907 37 100.0 37 ..................................... AATGGAATAAATAAATGGTATTTTGAATAGAGGTAGA 132981 37 100.0 34 ..................................... TCTACAAGGCAACCCATTCGGGCCAGGCTTGATG 133052 37 100.0 34 ..................................... TTTATTGAGAATGTTGACCCTCCATACGGAACAA 133123 37 100.0 35 ..................................... TTACTCAAAAGTATGCGGCTGAAATTAATCAGAAA 133195 37 100.0 35 ..................................... AACTGTTGCACCCATCTCTTCAGGCGTATAGACTG 133267 37 100.0 35 ..................................... CACTTAAATTCGTGGCATTACCTAGCATCAAATCA 133339 37 100.0 35 ..................................... TCAACAAAACACGCTTTTAAACTCTCTTAACTCAA 133411 37 100.0 36 ..................................... CAGGATACCGCAGAATTGATGAATTAATGGATGCGG 133484 37 100.0 41 ..................................... CTCTTAGTAGTTTCTCAGCAAAACGGTTGATCGCCTCACAG 133562 37 100.0 39 ..................................... CAAAGAATTAAAGCATCGCAATCTTGGACTATATATAGC 133638 37 100.0 35 ..................................... AAGAGTAGGTAGCAATCAAGGTTTGATTGCATCAA 133710 37 100.0 36 ..................................... TCCAGAACCCCCACTAAGCCCATACAAAACTTTGCA 133783 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.9 36 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACCAGATCGGGTTCTCTATCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACCAGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGATCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGGCTGTGCTGCTATGATTGAATATCAGCCGCCCGTAACGATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAAAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCATTGTTTTATTGCTTCTCAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCCATTTTGGGTTTGCTGCTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACAGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTGCCGCA # Right flank : CTGATATTTAATTTCTCTGCACATTCCCTAGCCTGATTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACCATACGTGTCAACTTAACGCGAAACCTGCTTGGTTGCAAGGTTTTTGCCCTCACCCCCAACCCCTCTCCCACCGGGAGAGGGGAGCAAGAGATTTAATTCCCCTTCTCCTGGGGGAGAAGGGGTTAGGGGATGAGGGCGAAAGTTTTGTACAACGCCCGTCCTATATAGCTTTTAGCTTAAGTTGACACGTATGGGCATCCACAATCTTTTGGTATATCAAATTATCTGACTGGTGCCCCTAAAATCTGTCGCATTCTTTTTTCAAAATGGTAAGCTATTCTGCTTTTAAGTTGCACAATCCCTCATGAGGTCTGTTGACGGTTGACCGTTGACAGTCAACCGTTAACAGTTAACAGCCTTCATGAGTAGTTATGCCATTTAGGCGCGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 17213-16508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930358.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 17212 37 100.0 34 ..................................... CATCAGCCAAATAACTAAACTCGCTAGCATCCAT 17141 37 100.0 37 ..................................... AACCAGTCCGTCTACCAGGGAGGAATACTATAAAGAA 17067 37 100.0 39 ..................................... TTATTGATAGCAGAAGGAGACCCCAATCTTCCATTTGTG 16991 37 100.0 38 ..................................... AATAGTAATGCCGATAGGCAGGGGTTGACATTCTACAA 16916 37 100.0 34 ..................................... ATTACACCATCGGGAATGCTCCAGGTTCTCAGCA 16845 37 100.0 40 ..................................... AAGCAATCGGGTAATGTACGGAGCGCCAACGGGAAGCGGC 16768 37 100.0 34 ..................................... TTCAATACTCTAACTCTATCCCCCCAACAATTAT 16697 37 100.0 34 ..................................... AAGACTACGACGGATAAGCAGCAAGGTTAATACT 16626 37 100.0 45 ..................................... AAGTATTAGCCGCATTAGCGGAAGTAGTAACGATAGTGGCAAGAG 16544 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 10 37 100.0 37 GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Left flank : TATTAGGGATTGAAACAGAACAATTTTATAAAATCTATGACCTCAAAGAAGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACATTAATTCATGTCCATATCCCGACGACTCATAAAAGTTGAAATTTCTCTTAATCCCTATTACTCACCATTCGCGTAATCCAAATCGGAAATAATTAATTCCCAAAAAACCATGAAATTCCTACTATATATAGCTTTGGTTTTGGTAATCAGAATAGAAAGCTTACACTTACCCGATTTCCCTCAAAGATTTCAGTAGGAATCTGAATGTATCGGTGCGATCGCACCGTCATCGCACTGTGAACTAACCACGCCTCTAAAGGGTATATGGATAAAAGTTTGATGCGATTAATCCTTTTGTTGTAAGCCTTTTAACCATTTTGATGAATTCTTTATTTTCAGAATCGATTACGCGAACGATGAGCTATTAGGGATTGAAACGAACAAATGGAATTATCGCCAGTCAAACTGTATC # Right flank : TGCCAAAATCGGAACGGGCATCAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATCTCTTACCCTTTCACCTTTTCCCCTAACTAAATTCCCAGTTGAAAATCCTTAACCGAGCAGTATTGCCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACGCCCACCCTATATAGCTTTTAGCTTAAGTTGACACCAATGCACTGCGTTGCGCGGGTTCCCCGCGTTGTAGCAAGTGGCATTGTGTTACGGCTGTGCAAGGATTTCGGGCTTAGAGACAATGAAATTTAGCCGTAACGCACCATCTTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 18092-17554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930358.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18091 37 100.0 34 ..................................... ATTATAAAATGAAACTTTACTGAAATTTCTAGCG 18020 37 100.0 33 ..................................... GCAATGCAGATGTGCAATGAAATAATGAATGCT 17950 37 100.0 37 ..................................... TAATTGCTGCTCAATTGGCTTTTTGCTATTTATCCAG 17876 37 100.0 35 ..................................... CGTACTCATCACCAGGGAATGGGGCGGTATCGCCT 17804 37 100.0 34 ..................................... AACATATCGCCCCCCATCAGCGGCCAATCTGCTA 17733 37 100.0 34 ..................................... AGAACAATTTTATAAAATCTATGACCTCAAAGAA 17662 37 100.0 35 ..................................... ATTAATTCATGTCCATATCCCGACGACTCATAAAA 17590 37 73.0 0 ..........................CTC.CCATTCG | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 96.6 35 GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCGTTCACAACCAACCTGATCGGGTTGTCTATCAATGAGCGCTCCTTCGTTCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTGGTAACCAACCTCGTCAATTTCTCCACTAACCAGCTCTCAATATATTGATGTTTGAGCCTTCCTAATGCATTAGCTGTGGTGCTAAGGTTGGATATATGGGCAGAAAATCAGCCCGCGACGATACTATTTTCTTGGCAGAATGCGCGGATGGGTAGGTGTCAAAAAGGCAATCTCACCAAAAACAGCTAAAACTATTTATACGTAAGGCTTCCACTGATTCATGGCTGTTCAATCACCCGCGCGCTTTACAGAGATTGACTTTCAGCCATTTTGCGTTTGCTGTTTCATTATTGCTTATGTTATTATGGCACTGTCCGCGAAACAGAACCTTGAAAACTATATATACATCGGCTTTGGGAGTTCCGCC # Right flank : CGTAATCCAAATCGGAAATAATTAATTCCCAAAAAACCATGAAATTCCTACTATATATAGCTTTGGTTTTGGTAATCAGAATAGAAAGCTTACACTTACCCGATTTCCCTCAAAGATTTCAGTAGGAATCTGAATGTATCGGTGCGATCGCACCGTCATCGCACTGTGAACTAACCACGCCTCTAAAGGGTATATGGATAAAAGTTTGATGCGATTAATCCTTTTGTTGTAAGCCTTTTAACCATTTTGATGAATTCTTTATTTTCAGAATCGATTACGCGAACGATGAGCTATTAGGGATTGAAACGAACAAATGGAATTATCGCCAGTCAAACTGTATCGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACCATCAGCCAAATAACTAAACTCGCTAGCATCCATGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACAACCAGTCCGTCTACCAGGGAGGAATACTATAAAGAAGTTGAAATTTCTCT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 3 845952-845259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930358.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 845951 37 97.3 35 ............T........................ CATAAGTTATTGGGGCAACTATACTTGGCAGAAGC 845879 37 100.0 40 ..................................... ATTTGGCGCTTACGCCGCAGGAGTGATACTACTATGAAAC 845802 37 100.0 36 ..................................... GGGAACGAAACCAACTCCGAATTCTCCATTAGGAAA 845729 37 100.0 34 ..................................... TCTATCAAACCTATAACCATATATTCAGCAGGAA 845658 37 100.0 37 ..................................... TCGGTGAAACTTAGCCCAATGCTTCTGAAATCTATTA 845584 37 100.0 34 ..................................... CATCACTAATAGATTTAGCTAGTTTGGAATTTTT 845513 37 100.0 36 ..................................... TATCAAAACCTTGTGTAGCTACAGGATTAACTGAAT 845440 37 100.0 37 ..................................... CACATGGATGCTCAAGTGAAATGTTCTAAAGGCGGAG 845366 37 100.0 34 ..................................... GCGTAAGATTCTTTTTCTATATGTACATCTTTAA 845295 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.7 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : GTATCTTAGTTAAGTCCTAGGAGTAGAAATTCTCATTTACTCATCTTGACAAAGATAATATTATTCAGCCATAATTAGAAACGCGTATTCCGGGGTTATAGCTCAGTTGGTAGAGCACTTCAATGGCATTGAAGGGGTCAGCGGTTCGAATCCGCTTAGCTCCATCTGTACATTAAATATTTATTGTCAGGTTTAAAGAATTATTGTCCATTTTGACGTAGTTAAGGGACATAAGTAACCTGTTTTCTTGACTTTCAGTACTCAAACCAGTTTTAAATAATTATTGTCCAGAGTTGAAACCAGTTTTAAATAATTATTGTCCAAAATTAAGTTAAGTTTCTCGCTAGATACATTGACTCTAAATGTATCTAGAGATCTATGGGATCAACTGCACAGTTTTAGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTTTACAATAGAACACATAATAGTGAAATTGCTGAAAACATAGCGATAAAAT # Right flank : CCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCTCCTGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGAGGTATTGATGTCCTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGGAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGGCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACGCTTAGATGAACGCACAGGTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 1 126249-126068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930369.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 126248 38 97.4 33 T..................................... TTTGAATAATACACTACCCCAATAATACAGCAA 126177 38 100.0 34 ...................................... CCCCGCAAATATCTGGGGGCATCAGAGCAGGTAC 126105 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================== ================== 3 38 99.1 34 AATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Left flank : GGTTATTGTCATGCTCTTTAAAAGCGTGAATGCCTAATTGCTGGTCGTTAGAGTTTGCCCTTTCCAATGTATACCAGATAGACTATGACAAAAATTTTATGACATTGACAAGACAAATACAGCAAGTTGCAACTTGGTGAGGTACGGCTATACAATTTCAATGCTTAACAGCTTATCGGGTGGAAATAGTGCTGATTTTTGCGAGTGCGATCGCCTATCAAATGCTTAAAGCGTTTGTTAAAGTTGAAATGCAAAAGATTTTTTAGCTCAATGCGCGGATGGGTAGGTGTAGAAAATCTCGCCGTTGAACAAATAGTTGTATTCCTTATAGGACAGTCTGTTGGATAAAAATTAAATTAAAACTATCCGCGCACCTTACCCAGACTTAGTTTCAGCATTTTTTAAAAAATTAATTGACATTTTTATGTGTTATGATTAGCCCATCCGCGAAACTGAACCTTGAAAACCAAATAGAGACTAGCTTTCCGGCTTCTGCCGCT # Right flank : TAAAGCAGAACTCCACCACATCATATTTACCAAAAAATTGGGTCTAAAGCCCCGTGCTTCTAGCACGGCTTTTCTTCAACTTCCGGATCATCTCTCTAAGTACGTCATTTTGAGTGCGATCTGTTTCTTCGCAGTATTTCAAAAGCGTTTCATACTCTTCATTAGAGCATCGAACTGTTAATTTCTTCATGCCGTCATATTGCCGTCGTTTTATGGTATAATACTAGCATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCTTCCAATACGCATCCTTCAACGACAGCCGTTCTTTACACTTCTTCTTGGCTGCATGGCCAGTAGTCGGTATCTGGTTCACCGCATTGGGCGTAAGCACAATGGCGTTCAACTTGAACGGTTTCAACTTCAACCAATCAGTGATTGACTCTCAAGGTCGT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 651748-651186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930357.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 651747 36 100.0 47 .................................... AACATAGCTACCTAGGCAGACTCTCTTTATCCTGTTATAGTCGGCAG 651664 36 100.0 38 .................................... CTACGTCCCAATCCCATTTGCAGAGCATAGGGTGCTGG 651590 36 100.0 36 .................................... GGTGACTGGGGTATTGCTAAACACTGGTCTAAGATT 651518 36 100.0 37 .................................... TGGATATCACCGTCGAAGCCTTCGGTTTCTTCAAGTA 651445 36 100.0 39 .................................... CCGATTTGTGCATGAACAGCTTCCTTCCAAGCTTGAACG 651370 36 94.4 36 .............T......A............... ATATCGCTGTATATCCAACAAGCGGTATCGGACTTA 651298 36 97.2 38 ....T............................... CCAGCAGTATGACCAATTACTTTAGTTTTATCTGTACT 651224 36 86.1 0 .............T.C.....T........T....T | G,TA [651188,651191] ========== ====== ====== ====== ==================================== =============================================== ================== 8 36 97.2 39 GTTACGCTTACACCTACCCCGCAAGGGGATGGAAAC # Left flank : GTTAACAGAGAAGGAACCGAAAAAAGCCAGTTCTTTGCAAGAAGGACAGATGGTTAAGGTAAAAATTGTGTCTCTCAAAGAAGATGGCAGCATTAAAAGTGTAAAGTGTGTAAGTTAACTCAGTATTTGAGCTTAAAGTTTTTTATAGGTAAAGCTTGACGAAGATAAGTTATTGAATTAAGTTATTTACATTGCAAAGTTACTGTAAAGTCCTCAGTGCTTTCTCTAGCTTTTTTAGACCACAGAACCTTGAAAATTCAATAAATATATTGTGTTTCTGGGGTAGATTTCCATACTACCCTGGACAGGAAAAAGCGGTTTTGCGGCCGATCCGCCAAATCGCTGAAACCCTAATTTTTTCGTGGAATCGGCCGTTCGCTTATCCTGTAAGGCTTTCAGAGATTTTTTCTGGATATTTTGCTGGCGGAAAAGCAATAAAATTAGTATCGGCCGCAAACCGCCTCTAGAAGCTATATAGGATAAGGGTTTCAAATCGAGGG # Right flank : TATTCACCCATACACTCAGGTTTGAAAAGAGCGATCGCTTTTTCTGAGAATGATTATTTTTCGCATCAAAGATTCAGCCAACCAGACTGCAACAATGCGATTCGGCAAAGTTTGCAACTAACATGAATTGGAAGGATAAATTTTACACTAAAAAGTCAAAAAAACTAATTTATTTTTAATTCATAAATAAATTCTCTTTGAAACAGAAAAATAATCACCACTAATATTGAGCGATTGTTTTACAATCTGTAATATTTTGCTGATTCCCTTGAAAATAAACAATTTCAGCAATTACAGACTGCGTAAAAACCTAATTTTTGCTTTACATAACTCAACAATTGTAGAGTTAATAACTAATTACGAATTATGTTGAAATTGATCCCTATTTATTTTTAATTCAATGTCCAATGCCTGGAAATTACATAAATATCAATACCACAAGAGATAACATTTTAAACTCATATCAATTCTTGATGGATCTGCATAGAATCAGATCCCCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGCTTACACCTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 752768-752431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930357.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 752767 37 100.0 42 ..................................... CCAACAGCTTTTTTTTTGCGAACTCTTCAAAAGCAGATTAAG 752688 37 100.0 37 ..................................... AATTGCCAATTGTGAATACCTGGTAAAAATCTTTCTC 752614 37 100.0 35 ..................................... GATGAATTAGAAAAGTTAACGGGTTACGATTTCTT 752542 37 100.0 38 ..................................... ACCGATATAGGTACCACAGATAACGCAATACCCAGGTT 752467 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 38 ATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Left flank : CTAACAGAGAACGAGCCAGAAAGAATTTAGTACGCAAGCATGAAGATATTTCCAACCGTCGGCGTGATTGGTTCTGGAAATTAGCTCATGAGCTAACAGATAGGTTCGATATTCTCTGTTTTGAGACTTTAAATCTCAAAGGAATGCAACGTCTTTGGGGCAGGCAAATATCAGACTTAGCGTTTGGTGAGTTTCTGCAAATCCTAGAATGGGTTGCCAAGAAGAAGAATAAACTGGTTGTCTTTATCGACCAGTGGTATCCAAGTAGCAAGACATGCTCTAATTGTAAACATATTCTAGAAAGTCTTGATTTGTCAGTTAGAGAGTGGCGTTGTCCTTCCTGTCAGTCAGTTAATGGAAGAGACGAAAACGCTAGTCGCAATATTTGTGCAGTCGGGGCATCGACTGTTGGCTTAGGTGATGTCAGACTGGCTACGCCAGCAATCGCTGTCTGAAGCTAGAATCCCCATGCCTTCAGGCTGGGGAGTATGTCAATGCCG # Right flank : GCTCTTATCATCTCTGCTCGCTACTATCGTGCTGAATTGTGATTAAAGCTAATTATTAGTGCCAAAAGCACTACTATCCTGAGATCTGAAAGATATCTGACTTTTAAATAAGTAGAACTAATATGTTTTATTACATTTACAAAAGTTAAAGTACTTGATTAACTTTTGTAAAGCAGTGTAAATTACTCACATAGGCAAGAACACGCCTAATTCATACATAACATATAACCGCAATCATAAAACAATGACAGCAACCTTACAACAGCGCTCTAGCGCTAACGTATGGGATCGCTTCTGCGAATTGATTACCAGCACCAATAACCGTTTATACATCGGTTGGTTCGGTGTCCTCATGATCCCAACCCTACTAGCTGCAACCGCTTGCTTCGTAATCGCATTCATCGCAGCGCCTCCAGTAGACATCGATGGTATCCGTGAACCTGTTGCAGGTTCCTTAATCTACGGAAACAACATCGTCTCTGGTGCAGTTGTTCCTTCTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 1634354-1634729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930357.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================================================================================================================================================== ================== 1634354 34 85.3 163 T......................GG....CC... TAAAAAAATATCCCAGTATTTATTGTGGGGTGGACATCTTGTCCGCCCAGTTTATGTGGCGGGCAAGATGCCCGCCCCACAAGATGGAATAATTTATTTCTTGGAAGTCCCTAATTGATTGAAAACAACTCATACTAAGGTACATATCGTACTTGTTACTTCA C [1634380] 1634552 34 100.0 37 .................................. CAAATTATGAGGATTCATATGAGCGGGCTGACGCTAT 1634623 34 100.0 39 .................................. CCGCCTGTTTTGGGGGAAGCTGATTTGGATTAAGAAAAA 1634696 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================================================================================================================================================== ================== 4 34 96.3 80 GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAA # Left flank : TTTTTGCTTGGTAGATACTAGTATCCTTTTCACAGACCCATACTTTAAAAAGACTTGTCTGATATCCTCATCTTCAATTTCATGGGATAGATTACCAATATAAACTGACATAGAATATCTCCGAGCTAACAGAATGTAGAGATTTACATTTGGAGAGGTATCTCTATAGTCACTTGACCAAAAATATTTCTCAATAATTTAATAGTAGCATGGTTTTAAATTTTAAACATATTTAAATCAGTACAGGTTTAAGTAGCTTGGTTTTTTAGCTTAAAAATTTATCAAGAGAATAAACCTCAGCCCATTAACTAAGGTAATAAATATTTTTTATAAGTAGACGCAACTGATAAGTCAATTAGCCAGTACAACAAGGCAAAAGTCAAAAGTTAAAGGTAAAAAGAAAGAATACTTATCCCACCAGATTTTTAGCAATTACAGATGGTCTGTTTATTTACGCCGACTTGTACTAGGCAGTTACCTACTTTCCCAAAACTCCCTTC # Right flank : ACCCTACCCTTGTAGAAAGCTTATTAAATAAGGCTTACAGCACCATAAAACTGAGGGGGGTCTGTTTTACCTGTCAACAAGCCACATTTATTGACAATATGGACAGCCTGCAAGTGCCTCAAACCCTTATAGAGTAAGTTATCTGAGGGGGTCTACGAAAGAATCAGCATTTGAGCTTTTGCACGACCCCCTCAGGTTACATTTCTTAATAAAATGGCTTAAGGAAACTAACCATGAGGTTACAAGCCAAAGATATATATTTATTGAATTTTCAAGGTGCAGCGATTGGTATAAATAGTAGCATAGCCAATTTTCAAAGGCAATCTCTGCCTCACAACAATTTAATCAGCAAAAGCAAGTATTGCTTTCTTCAAATCTGCTTTGGCTTTCTCAAAAGCTGTTTGTGCTTTCTCATTTCAGTGTATTCAGCAAGCCAAAGCAAATATTGCTTGCTCAAAAGCTGTTTTGGCTTTCTCATTTCAGTGTATTCAGCAAGCCAA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 4 2078062-2077288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930357.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2078061 37 100.0 36 ..................................... ATTTCATTTCTGCCATGTCCAACACTCACCCACACG 2077988 37 100.0 34 ..................................... ATTCCATAAGAGATTTTCTTTTGATTGGCTCTAG 2077917 37 97.3 37 ......................T.............. ATTGCAAGATGATCGCCTATTACCATTTGATCGCCTG 2077843 37 100.0 37 ..................................... TTTAACTTTGGCGATCGCTTGGTTACGCACATACCCA 2077769 37 100.0 37 ..................................... TTTTGCTTAATCTCCAGCCTGTTACCCATCCACTTTA 2077695 37 91.9 35 ...G.T..........A.................... GCCAGTGTGGTTGTCTCGCCTAAAATGTGAGATGC 2077623 37 89.2 43 ...G.T..........T.....A.............. CTTCTTGACTTCTACACCTGCTGTATACATCTCGCAAGGCACT 2077544 37 89.2 36 ...G..A.....G...A.................... TAACCATATTCCCCAGGCTCATTCTTGGGGTCGATA 2077471 37 91.9 37 ................G.....A........G..... AGTACAATCATTTGTACAGCATTAGCTGCATTATCAC 2077397 35 81.1 37 C.....A--.......G.....A........G..... TTAGCAGCATTTTTGGCAACCTGAGCAACGTATGCAG C [2077385] 2077324 37 78.4 0 .........C.T....A....AT.........A.T.G | ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 92.6 37 GTTTCCGCTAACACTTCCCCCGCAAGGGGATTGAAAC # Left flank : AGTAGTACTTCTTTTACTAGCCGATGAGCCAGCGCCAGGTGTGTTGGCTCATTTTTGTTGTGAGTATTTGTACCTTTTTCTTACTTTTAAGAAACAAAGTAAGAAAAAAGTAAGAAACGCGCATTTCTTACTTTGTAAAACCTATATAGGGTGCGGATTTCAAGAGCCAATGCTACGCAACATTCTTGCGCGGTCGTACCTCTGTAGTAAAGATTTTCAGTACAACTCTATTAACTTATTTATCCTACGCTTGACAGGTTTTAGTAGCCTATTCTACTCTGTTGTCTAACTTGTAAAAAGTTGGCATATCGAAGCGAGGTCAAAAACCTGGCGTATACGCCAAAATCGTCAGAACCTAGACAAATCAATAGTTACAGCTTTTTAGCTATTAGGGATATTAGGAATTAGTTTCAATAACGGAGCCTGAAAAAGACCTAAATTTTCGACCCGTCAAATTCCTCCCTGAAACACTTGCTCTGTCATGGTTTCAATATGGCAGG # Right flank : GCGATCGCCGCCAAGGGCATCGCACCGTAAACGGAAAACCCGATTGAGTTAAAGCCAGGGCGCTAGTATTGACCCTGGCAGTTTTCGATTATGGACAAGCGAGATCAGTCGCCGTAACGTTACAGTGACTCAAATCTCGCCTGCCACAAACGAAAAACTTTAATGCAACTGGGGGATGGGCATTGGGTGTTGGGTGATGAGCTTGGTAATAAAATTAACTCTTTCCCATGCTTCGATACTGATTATGGGAATCCCCATAATGCTCTGCGATGGAGCAAGCGCCCCAGTTGCTCACACTTCCATCACGGTTAGCTCGCCCTGGCAAATCCTCGTGCCTGCCCTTTGTGGCGCTGCACAAGGGGTGCGGCGTACTTGTAGCCCTTATCTATCAGGCGCGCATCCCTCGCCCGCTTAAAGGCGAATGTCGCCGCCTTTGCCATCAAATCTACCGCTATGGCGATCGCAACCAGGGCGCAAACACCAATGATTGCTGGGCTGGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCTAACACTTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 198322-198501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930372.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig15, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 198322 28 100.0 50 ............................ AGGAGACGTTTTTAGTTTCGTCACGCAGAATCGTGGTGCTTAAGTTTCCA 198400 28 100.0 46 ............................ TGGGAAAATATAGGTTAAGTCTGCTTGAATCATTGCCTTGTTTCCA 198474 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================== ================== 3 28 100.0 48 TCCCCGTTAGGGGTAATGATTTGAAAAC # Left flank : ACTTTGTGCGTAAACCCTTGCGGGCAAATATCATTTTTGACAAGATGGCGGAACACTTAGGTGTGCGCTACGTTTACGCCCAAGAAGCGAACCAACAGCAAAATATAGAAATTGGTTCTACTAATAGTGCATCCACCCCAACCAACTCATTAACAGTTGCAGACTTAGAACTGATGCCGAGAGAATGGATAGAACAACTGCATCAAGCCGCGCTAAGAGTTAATAGCAAAGAAGTATTGAGATTAATTGAGCAAATTCCACAAAAGAGCGATCGCCTTGCCAAAGCCTTAACTGATTTAGTTGATCGCTTTGGTTTTGAAGAGATGATCGAATTAACCAAGCAGCAGCAGCAGGCGGTTAAAAAACCCGTTTAATGTGCAAAAAACTGATCGCTGGGATATCAACATTTTTCTATCACATTTAGTAGTTGGGTAGGGTGTGTTATCGCGCCAGCGTAACGCACCGTCAAATATTTGCTGAGTTTTTCATGGCTGTTTTAG # Right flank : CCCTACCTTTCTAGAAGCTTTACCCAGAAAGGGTTACAGATACCCATTTTCGCGGGGGGTCTAATTTGCTTGTCAACAAGCATAAATTATTGACAATTAGACATAGTTGGAGGTAGTTCAAACTTATACCCAGCAAGGCTTTCGCGGGGGTCAACGAAAGAATAAGAGTGTTCCAAAAAATAAACGATCCAAAACCTGTCATTGCGAGCGAAACGGAGTGTAGCGTTCGCGTAGCGTCTCGCAGAGAAGCAATCGCAAAATCTTGCAACTACGAGCGAGTCTATGCGATTGCTACCCTGCGGGAACGCTACGCGAACATTCCGCTTTGCTCCATTCGCAATGACAATTGAGCATTTTTTTACTTGGAGTACTCTAAGGGTTTCAGAGATTAGCCTACCCCCGCGAAAAATTTAAGTGTCAATAGTTAAAATAAACACTATTGTTTTCAACGGGAAACTTGATATTCAGTTTTCAAGGTGCTGTGTGGATTAGGGCATAGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGTTAGGGGTAATGATTTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 200061-199877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930372.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 200060 35 94.3 41 ....TT............................. TATCGCTCTCACGCAGCAAAGTACCACCCCAAAAAATTTAG 199984 35 100.0 38 ................................... CGAAGATTGCGAAAAGAAAGCAATCTTTGTTTTTCAAA 199911 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 98.1 40 GTTTCCATCCCCGTGAGGGGTGAAGGAATTAAAAC # Left flank : AGCCCCCTCTCCCACAGGGAGAAGGGAGCAAGAGATTTGATTTAGTTCCCCTTCTCCCCCAGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACGCCCACCCTATATCGCTTTTAGCTGAAGTTGACACCTGTGGGCAGTGCCTCGCCCCTACAATCTGTCGCATTCTTTTTTCAAATTGGCATTACTTAAGCAAAAGTTGCAGCTCAGATACCCGACTTTTTGAAAAAGTCGGGTATCTAAATCTCGCTAAAGTACGTGAAATTCAACCCTACTGCTAATTTTCA # Right flank : CCTAGCATTTTCAAAGCCTGATACAGAGAGGGTTAGAGATAGCCATTTTAGCGGGGGGTCTAATTAACCTGTCAATAAGCTGAAATTATTGAGAATAAACCACTAGTAGAGGCTATTCAAAACCTTACTGGGTAAGCTTTTCGCGGGTGTCAACGAAAGAATCAGGGTTTCAGAGATTAGCCTACCCCCGCGAAAAATTTGCGTACACCAAGCTAAAATAGGTACTTTGCAATTCAATAGGAAACGTAAGATTAAGTTTTCAAGGTGCTGTTTTTGGTTGCGGATAGTATAACAAATTACTCTGATTTTTCCTAGCGTCAATAAGCAACTTAGGGATTTCCAAGAAATAAATTATTCCATCTTGTGGGGCGGGCATCTTGCCTGCCACATAAACTGGGCGGACAAGATGTCCACCCCACAATAAATAATGGGATATTTTTTTATTTGGAAGTCCCTTAATATAAGTTTTCTTGCCTACTGCAAATTATTGTTGTGTATCT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 11586-12334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930374.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11586 37 100.0 33 ..................................... TGCCAACAAAGAATGAATTAATTTTTCTCTGAG 11656 37 100.0 33 ..................................... AGGCATTGCCGATGGTGGGACTTATGCAAGTGG 11726 37 100.0 34 ..................................... TCCTTAGCTTTTCCCTTAGCTGCTTTGGTGCTTG 11797 37 100.0 32 ..................................... GGAAGATGCTAAGAAACGCGGGGCATCTAATT 11866 37 100.0 33 ..................................... ATCTCGTAGCTGATACTAAGCTAGCTATTTTAG 11936 37 100.0 37 ..................................... AAGATGGGCAGGAGTATTTACATGATGCTGGCGTGAC 12010 37 100.0 36 ..................................... GGGGTTTTGATTTCAGCTTGAACTTCTTGCTTTTCG 12083 37 100.0 36 ..................................... GATTTAGAAGCAGCTTCAGCTTTAACAATTGCTTGT 12156 37 100.0 33 ..................................... TTGAACCCAGGGCCAGAAGCCGAGTAACTGCTA 12226 37 100.0 35 ..................................... CACTAAGCACCAAGCATAGGGGAATTTAGCATTAT 12298 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 34 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GAAGATATGGCAGTGGAATTACCCCTACTAAACACGCTGTACCTCTCAATCATGAGAGTTCTACTAATCCAGGTATCCAAGATAGCACTACCAATCAGCCGAGAATATCTTCTTCCCGCAAGCAGCCTTCTAACCTGATTAATCGCATCATGCGTTCATTTACCAAACCCAAAGGTGTTAAAAAGAGAAGAAGAAATTAAATTCCATCTTGTTGCAAACTTGGTAAAGTATAATCTGTCAGCAAACCAGTTAGCATACTCTTGCTTCCCAGAATGCGCGGATGGGTAGGTGTGGAAAATGTAGTCTCACTCAAAATAGGCGAAACCATTTGTGCATAAGACTTGCACCTATTTATTGATGTTCAACCACCCGCGCGCCTTACATAGAAAGACTTTCAGCTATTTTGGTTTTGCCTTTTTGCGATCGCCTATGTTATCATTGCTCCATCCGCGTAACAGAACCTTGAAAACCGCATATACATTAGCTTTGAAACTTCCGCC # Right flank : CTTTGAGTACTGGCGTAGAGTTGTAACACAACGAGTTGAAATTTTATTGGCGTTGCATATTTGCGGGATGAATTCAGACTTCGGGAAAAAGCTAAAAGTCGATTCTTTGCGCCTTTGCGCCTTTGCGTGAGACAAAAATCATCCCATCAATCAGCAACGCCATTTTATTTACTCTCTGTCAGAGACCATTTATGCAGTGAATCTGAGGTAGGGTGTGTTACGGCTGTGAAAGGATTTGAGACTTAGAGAAAGATTAGATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAATTATTGCGTGACAAATCATATTGAAAATAAGCACCTAACACACCCTACAGCAAAATTTGACTTACTCTCTTCAGGATTAAAACCCTTTGCTTCCAAGCAAGCACGGATGATAAAAATGAAGTTGAACTCCATAAAAAAGCCCGCTTGTGCGGGCTTTTTATTGATTACCAAACTCTACAAATTGCCTATTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 95309-94704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930360.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================================================================================================================================================================================================================== ================== 95308 35 97.1 243 ............T...................... GAGGGAAGCGAATGCCCATTGGTGTCAACTTAACGTGAAACCCGCTTGGCGACAAGGTTCTGCCCTCACCCCCAGCCCCTCTCCCACCAGGAGAGGGGAGTAAGAAATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACACGCGCCGTATATAGCTTTAAGCTTAAGTTGACACATATGGCGAATGCCTCCCCCCTATCCCTATAAGTATG 95030 35 100.0 41 ................................... AAAATCAAAGGTAATCCATGCTTGCCTTTGATTAAGTCGAC 94954 35 100.0 38 ................................... TACTCCAATTCTTTTTTGGTTTATTTATTTACACAACA 94881 35 100.0 37 ................................... ATTACAGTTATTAAAACTGCTAAAGCAGTTAATAACA 94809 35 100.0 36 ................................... TTTATACAATTGGTATGCAACAGGCACAAGCGACAG 94738 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================================================================================================================================================================================================================================== ================== 6 35 99.5 79 GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAAC # Left flank : ACTTCCTTCCCCCTATACAAGCCCAATGTATAAGGATTTGGCGGCAAAATACGCCATTATTGGTGGCGCTGCTGGTTTGCTGATTGGCTCCAGTCAAGAAATGGTTCGCGAACTCAAGCAAGAACGAGATGCAGAAGAAGAATTACTGCGAGATTTAGATAAAGCTATTCGCTCTAGTACAAATAAAGAAAAGTAACGACAGATATCAATACTTGTGGGTTAAGGGAACAGGGGAATGGTTCAAGGGAAAGAAAAAACCTTTAACCCTTAACCTTTACCCCAAAACCAATTTTGAATTCAAATCGCTTAACCGAGCAGTATTAGGACAGATATATGTGTGAGTCCTTGCAATCATCAGTACCACGGAAATAGCTATACCAAATATCTCAATGCTTTTTAGGAAGTGTTCAAATTTGAATACTTCATTTTTTTATATCAAATACTCGACAGGGTGACAAAGAAGTTACAAAGCAGACAGGATAATGTGCATATAACTGCTA # Right flank : CCTACCCTTTTAGAACGCTTGCTATGACTGGGTTTGAAAGTGTCATTTTAGCGGGGGGTCTAATTTTACTATCAATAAGCATACTTTACTGACAATAAGCCACCACGACAAGCATCTTAAAGCCTTACTCAGTAAGCGATTAGCGGGGGTCAACGAAAGAATAAGGGTTTCCAGCATTGGCATACCCCCGCTAAAAATTTGCGTGTGAAAGGTAAAAGCTAATACTTTAACTTTCACTAGGAAACGTTATATTAAGTTTTCGAGGTACTGTAATGTTGAGTAATAGTATAACAAAACACTTAGAATTTTGAAAGCCGAAAACATTAACTTTTCAGTATTACAGACAAACCAAAAGCCAAAACAATAATAAAAGTTAGCATATCAATTAAGAGCGATCGCTCCGCTAAAGCCTTCTCTTTGCTACGCAACGCTAGGGCGAACGGCTAACGTACTTTTAGCAAATCTCTGATAGTTTTGGCTACACAGTGATGATGGTGTTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 2 415276-417344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930360.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 415276 37 100.0 35 ..................................... GACTCTGATTCAAAATTTTCTAAGTAGTAAGTAAT 415348 37 100.0 38 ..................................... CATCTTTTAATAGCTTCGTGTGGATGCAGTGGACGTGG 415423 37 100.0 35 ..................................... AAGCTCACCCTCTTGAATCCAATCCTTAACTTCAG 415495 37 100.0 35 ..................................... GTACGGGGGACTGGGGAAAAACTCGTTACCTTCAC 415567 37 100.0 36 ..................................... TTTTTGGCGTAGTTGCTGTATATTACGCGCTTACCC 415640 37 100.0 36 ..................................... CCAATGGATTCTGGTACTCTTACTGGCACTTTGGTT 415713 37 100.0 34 ..................................... ATCGGGTAGGCTCCACTCGTTTCTACCCAACCGA 415784 37 100.0 40 ..................................... CGTACCATCGTCGCTGGTATAACTGAACCATTTATTAGAG 415861 37 100.0 34 ..................................... AAACAATCGGGGAGCTGGTCTATAGATGTCGCTG 415932 37 100.0 41 ..................................... AGATATTTAGGAGATATCCACAGAACGACACGCGGAAGGCT 416010 37 100.0 34 ..................................... CTGATATTTGGTTGTTTCGATTCTCCATATTACT 416081 37 100.0 32 ..................................... CAGTGATTTTGTAGATATTATCGGGGGTGGTA 416150 37 100.0 33 ..................................... CTAGCCAAAATCAGCAAATCCAAGGAGAAATAT 416220 37 100.0 35 ..................................... TATCAAAATTATTTCCTGCTTCCCCCCAGTAAAAT 416292 37 100.0 34 ..................................... TAATTCACAAGCAGTCGATGAATTAATTGCGATT 416363 37 100.0 38 ..................................... GCTGGAGAATGGAGCAGCTACTTAGCTAATGCTGGCAC 416438 37 100.0 38 ..................................... GCCTGTGATGGGAAATTCACTAAGTCTGGTGCGGGTGG 416513 37 100.0 36 ..................................... TGACTATCTACATTTATCCAAATGTGAACCTGGCGA 416586 37 100.0 36 ..................................... CTCTAGGTAATGGTACTCAGCCTCCTGTATCAGACG 416659 37 100.0 33 ..................................... GTATTGGTACTCATACCCTTCAATCCAGTAGGG 416729 37 100.0 37 ..................................... AATAACTCAAGAGGAGATATCGCGGTGCTTGACGATT 416803 37 100.0 34 ..................................... TTCGGTAATTTTTGCTAGGCGCAGGGAACACTCA 416874 37 100.0 37 ..................................... CCACCTATTGGTAGGGCGGCTTTTTCATGGGTGCTTT 416948 37 100.0 34 ..................................... AAATTTTTCCCATCCGGCTGCTATTAAATCTTCT 417019 37 100.0 34 ..................................... AGTTCAGACTGATATTCACCAAGGTAGTACTGGG 417090 37 100.0 36 ..................................... GATGACATCCCCTGTGAGCTTGACTTAAGTAACTGA 417163 37 100.0 36 ..................................... GTATCTGACACATCCTTCGATAGACCCCTCCAATAA 417236 37 100.0 35 ..................................... ATGAGATTGCCCGAATCCCTTTGCACACATAGCAA 417308 37 83.8 0 G...A.......................A...A.G.G | ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 99.4 36 ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GCTTGGGGAAAAGGTGAAAGGGGAAGGGTTAAAGGTTTTTCTTGCCCCTTTTCCCCTTCCCCTTTTGCCCTTAACCGACAAGTATTGGTAGTACTCTTGCTGGATTTCTTACAAGCAGCGATATAGCATATCTATGTTGGGTTAAGCGCTGACTTAACCTAACATGGATATTGAAAGCTTTACCTATATTGTTTGTAATGTGGTTGCTGCTTTGATTAGTTTGAATGTATTGGCGAAGAACGAGTCCGGAATGATACGATTTTCTTCGCCGGATGCGCGGATGGGTAGGTGTTGAAAAAGTGTTTTCCACAAAAATCGCTGAAACGATTTCTGTATCAGGCTTTTCAAGCTCAATTCCTGTAAAATCACCCGCGCACTTTACAGAAGAAGACTTTCAGCGATTTTGGTTTTGCGTTTTCATTATTGCTCATGTTATTATGGCACTGTCCGCGCAACAGAACCTTGAAAACTTCATACACACTGGCTTTGGAGCTTCTGCC # Right flank : GTGTATCGAGCAAAGTAAAAATCAAATAATTGTAGGGTCTATTAGGTGCTGATTTGCAAGATGATTTGTCACGGAATAACTATCCTAGCGCCTAACGCACCATTCACGCGGCGGTGCGTTACGGGTAAATTTCATTATCTCTGTGTCCCAAATCCTTTCATAGCCGTAACACAACGCCACTTGCTATAACGCGGGAAACCCGCGCAACGCAGTGCATTGGTGTCAACTTAAGCTAAAAGCGATATAGGGCGGGCGTTGTACAAATACCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCCTCACCCTGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAAGTTGACACAGGTGACCCCTACTCGGCTGACTCCATAGCAGATGTTTTTGACAAAATACTTGCGTTGTTAAACAAAGTGCTTGTCTTGTGTATACGCCACTATAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 373488-374404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930361.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 373488 37 100.0 34 ..................................... AATTACTCTGCAACCGTCTCTTGCATCGGCAAAA 373559 37 100.0 34 ..................................... AACAGTTTTACAAACACAATGCAAGCCACTTAGG 373630 37 100.0 41 ..................................... GTTTGTAATTGAACGTTAAACTACCAGTGCCTGCGATTGAA 373708 37 100.0 38 ..................................... TGGTTGTGGGGCTGGGGCTTGCTGCCTGTCGCTGGCTA 373783 37 100.0 41 ..................................... TTACTGATAAACAAAGTAAATTAAGCTTTTGCTTGGCGGGA 373861 37 100.0 34 ..................................... AGTTTTCTCTAGAGTGGCAATCATTGTATTTATA 373932 37 100.0 36 ..................................... TTGCTAATTTATCCTTTGAGACAGTTGTGCCATTGA 374005 37 100.0 34 ..................................... GCAGAAGTTTGCAACACTCACCCAATTAATCAGT 374076 37 100.0 34 ..................................... AGCACCTATCTGCCTCCAAACGGTTTATGCTCAA 374147 37 100.0 41 ..................................... AAGACTTCGCTCTTGGTCGTAGCTCCACAGCGTACTCAATC 374225 37 100.0 35 ..................................... GAGCCAACAATCAGTTTTTCTCGCAAGACGAAAAG 374297 37 100.0 34 ..................................... GTGGGTGAAGCAAAACAGCGTATGGAAGGATACC 374368 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTTGAAATTTCTAATAATCCCTATGAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGACAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGAATGATACCCAGTACGCCAAACTGCGATCGCGCTTGCATAAGTTGATCAAAACTGATACAGACAATATCCGTTTTTACTCTTTATGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGTGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGAGGGGTAGGTGTGGAAAAACTAGTTCTCCCAAAAAGTAGGTGAAACTATTTCTCTGTAAGGCTTTCAAATTTTAATTGATGTCCAATTACCCGCGCGCCTTACAGAGATAGACTTTCAGCAATTTCGGTTTTGCGTTTTCACTATTGCCCGTGTTATTATGGCGCTATCCGCGCAACAGAACCTTGAAAACTGCATATAACTTGACTTTTGGGCTTCTGCC # Right flank : CGACGAACGGGCTAAATCTCCGTTTGCGGGGATTGACGCATATCGATAGCGCCTAACATACCCTACATTTGATGGGTTGAGGCTTGACAACTAGAGCAGTCAACTATCGATTGCTAAAGAGGCGTTGCATATTTGCGGGATGAATTCAGGCTTCTAGACAAAACTGAAGGTCGATTCTTTGCGCTTTTGCGCCTTTGCGTGAGACAAAAATCATCCCATCAATCAGCAACGCCGCTAAAGAAAATTATCGATAATCTATCACCAGTAATGCTATTGCTGGTATTCTGAAAGCGGCAAGGCCATTACCAGAAAATTGACAAAGCAAAAGAAAAACAATGGAAGTCGCTACAACCAGAGTTCCCCGTTGGTTCGTTCGCAGAGATATTGATGGTTTATTTGGGCTGGCGCTGGATAATTTTATTCAAATTTTATTGATTGTTAGTTTGTGCCAAACAGTTCTGGGCTTTCCGGCTGAGTTAGTTTATGGGCGGATTTTGCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 212530-213091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930363.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 212530 37 97.3 35 ................T.................... CTCCACAAACTTCAGTCAGAAAATTGTGTAATTTG 212602 37 100.0 37 ..................................... AAAGTCAAAGACGTTTTTATTTTGAGCTACAGCATCG 212676 37 100.0 37 ..................................... GCTTTACTGGCAGCGATACCACCATTACTTATGTAGG 212750 37 100.0 37 ..................................... GCAATTTCAAAAAGGCTTTGATAGGCATCTACCCAGC 212824 37 100.0 37 ..................................... CTGCGAAACCATCTGGTAAACCTCAACATAGGGTTGG 212898 37 100.0 46 ..................................... TTGTCAACTGCTGTCTGCACGTCCGCGGGGACGGTTCCAGCAGCAA 212981 37 91.9 37 A....T..........T.................... CTTGATTGTCGTGTCCAGAGCAGTAGAAAAAAGGTTA 213055 37 89.2 0 ..................A.T..........AA.... | ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 97.3 38 GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Left flank : GGGGGAATGAGTAATGAGTAATGAGTAATGAGTAATGGGTAATGAGTAATGAGTAATGAGTAATGAGTAATTTCTCCCTGTCTCCTTGTCTCTTCATCTCCCTCATCTCCCCATCTCCCTCATCTCCCCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCCCCCTCATCCCCCTCATCTCCCTCATCTCCCTCATCCCCAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTAGTTTTATCATGATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGGGGGCGAAAACCCTGGGGGATATGCCAAAATCGCCGGAACCTTGACAAGTGAATAATTACAGCGTTTTAGCAATCAGGAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCT # Right flank : CACTTGAGTAGCACCGTTTTCGCTTACAAGGCTGACTTTGCGATCGCATTTCCCCGTAAGATGATGAAAATATAGCTAAAAATTCTAGGCGATTATAAAAAAAGGGGCACAGCACTGCTGTACCCTTAAGAATCATTTATCTACCGCAAATATCATTTAAAGTTCACGTAGGATGCGTTAGCGATAGCGTGACGCATCAGTGCCAAAGCTGAGATTTTTTCAGAAATCAAATCGGATTTTTATACATTTTGTTAGGGTAGTGAATTTGTAATTAATTTACCGATGAGGAGTCATTACAAGAACTGTTGCTACTTTCTAACGTTGACAAATCATTATCTACAACTCCATCCCATGAATAGTTACAGATTTTAGTGCGAAGTAATGTACCAAGTGTCACGTTAATTGCGATGGCAAAGGAATCAATAAAAACGAGATTCACAAAGCGATTAATCATTTAACCCTCTTGAGGTAACGGGAGCATCCAGTGATACTTGCCCTAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 498112-498369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930363.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 498112 37 97.3 36 ..................C.................. ACCCAGTAACGCTTCATCTTCTCTCACATACTGTGT 498185 37 100.0 37 ..................................... CTTTCAAAGCAGGTGTAGAATTCATCGCAACATGCTG 498259 37 100.0 37 ..................................... TTGTCCCTAGAAATGTGTTTGTGATTATAAAAAATCG 498333 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 37 CTTTCAACCCGCCTCAAGTCGTGAGGGGTATTGAAAC # Left flank : CCTGTTACCGACTTCTGCAAGCAGTCCATTTCAGCTAGAGAAGTGCGATCGCCAACTCATCTGCAAATTTTATCCTCGGCGTGTTATAATCGAAAAGATTAAGGGCGCGTGGCTCAGTGGATAGAGCAACAGATTCCGGTTCTGTGGGTCGGGGGTTCAAATCCCTCCGCGCTCGTTTTGTGTCGATTGCCAAATTATTTGTCCGTGTTGACAAATTAATGTCCATATTGCCAAATTACTGTCCGCGTTGACAAATTATATTTGACAGCAATTTTCTGCCGTATATCAAGTATGGCAGAACTCTTCTTTATATGGAGCGACTAATTAGTATTTAATATTTAGAGCAAAAGTCAATCTCTCGAAACAAAGAATCTGTTGCTCTATCCTTTCAACCCACCTAAAAACTTTTTGCTCAGTGCCAACCCTTGAAAATAGTCAACTGCTCACTCTTGTGGCGTTACATATTTGCGGTTTGTATTACCTCTCAACTCAGTAAAGGA # Right flank : CTCAGCGCCTCAAATCCTTCACCAGCAAAGACTTCCAGAAGCATTTTTGTCAGATCTGCCAAAATCGCCTGTCTGTTAACACTTAAAAAAGTAAATTAACTGACATCATAAAAGCTACGAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATCTCCAGGGAAATTGACCCCGCTTCGATTCGTCAAAAAAATAATTAAGGTGGGTTCCTCCTTGGTTGGAGGTGATTATGTAGCTACCACTGCGGTAAACCCGCACCTCTTTGCTGGGGGCGCACCTTATTCCTGTCTTTAAGGGACAGCAGCTTCAAGGTTGGTAGAACGACTACAGGGCCAGAAAGCAAGACTGTCTTCCAACAGTCAAACTAACCCACATTTACACAGTACAGAGGCTTTATACAAGCATGAACTGCGGCGCTATTTATTGATATTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGGTTTTTTGGCGATAATTGTAAGCAGCGATCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGTCGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 419799-420762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930365.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 419799 37 100.0 32 ..................................... AAGTATGGCACTATAGTAAGCAAGGCTATTAG 419868 37 100.0 32 ..................................... GCATTGTTCCAAATATTCAATCAGAATTGTAC 419937 37 100.0 34 ..................................... ATAGCACCAGAGCCACACGTACTCAGGGACAGAG 420008 37 100.0 33 ..................................... TAATTTCAAAAAGTAAAATACATGTATTCATAA 420078 37 100.0 34 ..................................... TAATGTTTTTATAATCACTTCTTAGCCTGTTGTA 420149 37 100.0 36 ..................................... GATGGACAAGTTAAAGCAGAACTACCATCAAAAAAA 420222 37 100.0 35 ..................................... TTTGTGGTGGGATGTATAGTAGCCATTCTTTACAG 420294 37 100.0 35 ..................................... TTTTTTGTTGCCTAAATTAGACTAATTTTGAAAAG 420366 37 100.0 34 ..................................... CTGGATGACTTCGACTTGCAGTGGACAGAGCGTT 420437 37 100.0 34 ..................................... TGCTGGGCGATCGCTTCGATTTCATTGATACCAT 420508 37 100.0 37 ..................................... CAGAAGCGCTCACCTTCTGGTTCCGAAACAAACCACC 420582 37 100.0 35 ..................................... ATCCCGAAACCTATGCCTTGATTTTGTACTGTGGC 420654 37 100.0 35 ..................................... CGACTTTACACAGATATTCTTAATGGTACATGCCA 420726 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 34 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGCACAATCGGAAGTTATGCCGCAGGAATTTGCCAAGCTCATAGTGCCAACACTGTTGGTAGCTGGAGAGTATGACAAGATTATTCCTGCTGAGATGGGGCGACAAGCAGCCACAATGAATAACAAAGTTGAATTTGCGTTGATTCCTGACACAGCACATTTTCCTATGTTAGAAGATGCTCCAACTTACCTACAGCGAGTGCGGGAGTTTTTGCAAATTCCCACAAAAGTTGATTAAAGTTGATGTCCAATCCGACGATTTTGGTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAACGGCATTTATATATAAATCGCTGAAACTCCTTATATGTAAGAATTTCAAAGATTAATTGCTGTTCTATCATCCGCGCTCCTTACGCAGACTGGCTTTCAGCGATTTTGGTTTTGCTTTTTCTCTATTGCCTATGTTATGATTGACCTATCCGCGCACCAGAACCTTGAAAACCTTATATTGCTTGACTTTCAGGCTTCCGCT # Right flank : CGACATCAGAACTGGCATAAATGCTGATACGACAAACAGTAAACCTTAAATTGTAGTGGACTGACACGCCTACAATGAGGCATTAGATTTGATTAAATTAACCGCAGATAAACGCCGATAAACGCCGATGAATTTTTGCTATTGCATCAAATTAGCTGTGTCAGTCCAGTAGGATGCGTTAGCGATAGGGTAACGCATCGAGAAAGATGGTGCGTTACGGCTAATTATTACTCTCTTAAGTTCCGAAATCCTTGCACAGCCGTAACACACCCTACTTAATATTTACTTTATAAGTAGCCTCTTAATCCTTATTAGGGATTGAAATATAATTTATTCAACTTAAAATTGCTGTAAGTTTGGTTGAGAAATAAAATTTAAATTATTCTCAATTTCTCAATTCCTGCTTTTTTAAAACCGTATCTAACCAAACTAAATTTTCTGCTGACACCGCAGGTACAGGTTCTTGATTATAGTCAATCACTAAATCATAGTTACCTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 239599-240512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH930364.1 Tolypothrix sp. PCC 7601 strain PCC 7601 = UTEX B 481 FDUTEX481_Contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 239599 36 100.0 40 .................................... AAAAAAGGTTTTCCTTTTTGTTTAAATGCAAGAGGGAGTA 239675 36 100.0 35 .................................... ACCTAGATAACCCCCTGAAGCTGTTGATGCTAAAA 239746 36 100.0 37 .................................... TATTTGGTGTATTTTGATTAATTTCATTTACAACCAA 239819 36 100.0 35 .................................... CCTTCAGGGGTTACGGAAGCCTGTGCGTTTCCAAT 239890 36 100.0 36 .................................... TTTATAATGCAAAGCATTCATAAGACGCATTTCTAT 239962 36 94.4 42 ...G..G............................. GTGTAAGTCTTGAGGAAATCCAAACCTTGATAGAGCATGAAC 240040 36 94.4 41 ...G..G............................. CCCTGCTCATGATTGGTCAAGACCCGCAGAATGTCGTGGTC 240117 36 94.4 38 ...G..G............................. TTTGAATAACAGGCCTATTCGCAAGCCATTGAAGGCAA 240191 36 91.7 35 ......G.......A......C.............. CCGATCAGTTGCCGTCACGGTAACAGTTTGAGGCC 240262 36 94.4 34 ......G..............C.............. CCTGCTTTCCAAATGGTCATCTTCGCGCAGATGT 240332 36 94.4 37 ..............A.T................... TGGATAGCGTTCTGATCTCCCCAAGCGCCGCCATCAC 240405 36 86.1 35 ......G...G.A........C.....A........ CGACGAATTGCCCAGCGCAGTTGAATTTCTATTTG 240476 36 80.6 0 ......G.....A..A.....C........AA...T | G [240480] ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 94.6 37 CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTAGCAAACAAAAGTAGATATTGCTTTCTCCAAAGTTGCTTGTGCTTTCTTCTTTGACTGTATTTAGCCAGCAAAAGTAGATATTGCTTTCTCCAAAGCTGCTTTTACTTTCTCATTTCAGTATATTCAGCAAGCAAAAGCAGATATTGCTTTCTCCAAAGCAGCTTTTACTTTCTCATTTCAGTGTATTTCGCAAGCAAAAGCAATTATTGCTCAAAATCCACCAGTGAGATTTATGTAACAATTAAGTAATAAATTTGACTAAAAATCGGCAAAAGTTGTATTTTAAGGATAGTTTGTGTCCTTCATCGACACCACTCGCCCGCACCTTGAAAACCGCATAACTTCTTTGACTGGTGTCGATTGCCTACGCAGCAAAGCTTTCAGGCTTTGACAGCTTGAGTTTATTGAGAATTTTTCGGAGCTATTGACACTCAAAAAAGTGGTGTCGATTGAGGGGTCTCAAATCCTCTCCTGGCAAGGTTTCCAAAAGTGAACT # Right flank : TCTATTAGTAGTAGGTGCAGTCACAGGAAAAGCATTCTCTAGGCGATCGCATCACCTTGTAAGGGCAGAGAAAAAGTGAAGATAAGCAGTGCGATCGCATATCCTCAAGCAAACATTGCCGTCCAGATCCCCGACTTTTTCAAAAAATTGGGTATCTAAATCCCGCGTCAATCCTCAGTGGTGCGTTATACTGCAGGCTGACGCACCTACCGCTTTGTGATTTGTCCTTTGTCAAAAAATGACCAATGACCAATGACAAAATGAAATTTTTCCGGATTTGAATTCAGGAAAATAGAGATCCTGATTTGATTTATACTTTTAGATTCGTCTGATTATCGAAAAGCTTGAAAGTTGTATGTCCAGCCCCAGTCCCGACACAGTTCGCGTTTATTTGCAAGAAATTGGTCAGTATCCCTTGTTAACAGCAGACCAAGAGATTGCTTATGGTAGGCAGGTACAGCAAATGATGGCCATCGAGCAACAAAAAGAAACGCTCCGCC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTGACGATCACCTCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //