Array 1 15832-15619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000221.1 Streptomyces sp. SCA2-4 contig221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15831 30 100.0 31 .............................. AAGGCTTGAATTCGAAGAACTCTTGCCGCAA 15770 30 96.7 31 .............................C CGGACTTCTCCTGCCACATGGTCCCGGAGAA 15709 30 93.3 31 ..............T.............A. CCCGCGAGGACTTCATGCGGGTCGCCCTGGC 15648 30 90.0 0 ..............T........C.C.... | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GGCATGCCCCCCTGCCCCCATCCGCAGGGCTGGGTGACCGAGCACGTGCTGTGGCTGGAGGACGTCGTCGGCATCGCCGACAGCCTCCTCGCCGCCTGGCGCGGCTACCTCCCGGACAGCCACATGATCGCCCTCCTGGAGGCCTACGCCCACCAGGCCCGCCCGGCCGTCCCCTACGCCGCCGACCTGCTGCGCGCGTGGGAAGCCGAGGCCTTCGAGGCCTGCTCGGTGGAAGAGGCCGGGTGGTGGGAGGAGTGGCACATCCCGGAGACGGAGCGGCAGGCGCTTGACGCGCTGAACCACCAGCTGATTCCCATCGGTGCGATGCTGGTCACGGCGGTGGACCGGGGGTCGGCGGCTGCGTGAGGTTGGGGTCGTCGGGGGGCGGCGGGGGCTTGGCAGTGCAGCTGGGCGACTTGACCTTATTGCGCTATATGTCGCGCTCGGCGAAAGTGAGTAAAAACGGGGGTGAAGCTGGGTAAAGCCCCAGCTCGGACCCT # Right flank : AGCAGATGGTCGCCGAGCCGTACCGCTCCATGCCGTCCCCGCACCGCGGGGGCCCGCCCCCTAACCCCCCACCCCCGTCCCCACCAACCGATACCCCCTCTTCGTCACCGTCCCCACCACACCTCCGTACGCCCCCAACGCCCCCCGCAGCCTCCCCACCGTCGTCTCCAGTGCCCGCAGCGCGTGCTGCTGGTCGTCGCCTCCCGGGGCCGCCGTTGGCCAGAGGCGTCGTACGAGTTCCGTGCGGCTGAGGACGGTTCCCGGGCGTTCGGCCAGGGCTGCGAGGAGGGCGGCGGGGAGGGGAGGGAGGTGGAGGAGGGTGTCGGCGGTGAGGACGGCGGTGCCTTGAATGGTCAGGGGGCCCGCGGGGGTGGCCAGTTCGTGGCGGTGGCGGCGGGTGAGTTCGGTGGTGAGGACGCGGACGAGGGAGCCCAGGCGGCCGCGGTCCGGCCAGGCGCAGGGGACTCCGGCCGTGAGGAGGGGGCGGGCGCAGAGGGGGC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44203-43579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000023.1 Streptomyces sp. SCA2-4 contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44202 29 100.0 32 ............................. AGGCCGGCGGCCGGGGCGGAACGCGACCTGAG 44141 29 100.0 32 ............................. GTCCTCGGTCAGGTCGAGCGCCTCGGTGATCT 44080 29 100.0 32 ............................. GCGCTGGGTGACAGCCTGGCCACGCCAAAGGG 44019 29 100.0 32 ............................. CGATTCCGCGGCATGCCCGAAGCGGATCAACT 43958 29 100.0 32 ............................. GGCAGAAGGTGCTGACCCGCGAAGGCGGACCG 43897 29 100.0 32 ............................. CGGCAGGGCTTGGGCGGCATGATCGGGTTCGA 43836 29 93.1 32 ...G...............A......... GCCGTCGATGAAGACGGGATCCCGACGCTGGA 43775 29 93.1 32 ...G...............A......... GCCGTCGATGAAGACGGGATCCCGACGCTGGA 43714 29 93.1 32 ...GA........................ GGCGACTACGCCATCGGCGACCGCGACAAGCT 43653 28 75.9 18 .A.G.........TC......-...A..G GCGCGCCACCTGGCTCCA Deletion [43608] 43607 29 82.8 0 ..AG........TT......C........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 94.4 31 GTGATCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCCGCTGAAGAACATCAGGACCGGCAGCAACGAGTGCTACGACCGCCTGGTCTTCGACCTCGGCGGTTCGTCCAAGACCGGCTTCCGCGTGGGCTACGTCGACGCCTTCCACCAGGACGGCTCCGGCGACCTGATACCCGTCAAGGGCGGCGCCATACTCCAGGTCTACTTGAACGCCCCGAGCTACGACCCCAACACCGGCACCCCCACCTACCCGGGCCACGGCCGCCAGCCCCTCCCGGGCGTCGACCTCACCGGCTACCGCACCTTCCAAGACACGAAGTTCGGCGCGAGCTTCGAGGGCCAGACCCAGGTGGCCGTGGGCGTCCGGGCTCGACTGCCGTTCCGGGTCGAGCAGTCGGGGGACAAGCTGATTGTGGATGTGGCGCATAGCTGGTGAGGGCCGCTGGGGCGGAATGCGCGGTATGGCGGGTTCGCCGGAATTTCGGGAAGTGAGTAAAAACCGAGGTCGGCGCGGCTAAAGCCGCAGGTGGCGGCCT # Right flank : GGGGCCCTCGCTCTAACGGTGAAATCTTACGGATGCCGCCGTTGGTGGTGGGCTACGTACGCACCCGACAGGCGCAGGGTTCGGTCCGGGTTGTCTGGGTTCGCTTCTGGGCGGCGTTTGGTGTCCAGGTCGGCACATGCCGGGCAGCCCGCGATTGGGGCGGGCATGGCTCGTGGGCCGGCGGGGTGGGGGAGGCGCGGCAAGGGGCGGAGGGGCGCGTGGGGGCGGGGCATCAGCATGGGGTGTCCCGTGGTTCGGCGTGGGCGCAGGCGCGGAGCTGTGCGTTGGTGGGTGGGGGTGGGGAGTGGGAGGTCCGGGTCGCCGCTACCTTCAGGGCGTCCCGTAGGGACTCGCACAGGAGGGCCGTCGCGCAGCGGAGTTCGGCCTCCGGGGTCGAGGGGTCGTCCAGTAGCTCCTGGGCGTGGGACAGGAGGTCTGCGGCCACAGCGAGGTGGAGGGACTCCACGTCGTCCGCCAGGCGGGACAGGCGTCCCGACCCG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGAGGTGGTCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26529-27720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000104.1 Streptomyces sp. SCA2-4 contig104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 26529 30 100.0 31 .............................. ACCCTTTTGGAAGCGTCTTGGACGTCCCGCA 26590 30 100.0 31 .............................. TCCACGGTGGCGCGGCGACCGAGACCAAGGT 26651 30 96.7 31 .............................T CGCCCTTCCCGCAGGCCCGGGCGAGGCGGGC 26712 30 96.7 31 .............................A GGGCGCGGCCTGTGGCCTCGTCGTAGGAGGC 26773 30 100.0 31 .............................. AGACCCGGCGGGCGTACGCCGGCGACTGGCA 26834 30 96.7 31 .............................C TGATGGTGGATCAGGACCAGTCCGGGATCTG 26895 30 96.7 31 .............................C CGCCGGGAGGGGACACCACGTGAGCGAGCAG 26956 30 90.0 32 .........A....T..............T CGGCGACGGCCGTGGTGCGGGGGGTCCGCAGG 27018 30 96.7 31 ...A.......................... CGACGCTCCACGGGTCCACTACATACCTGGG 27079 30 96.7 33 .............................T CGGCGACGGCCTTGGTGCGGGGGGGTCCGCAGG 27142 30 93.3 32 ...A.........................T CGGCGACGGCCTTGGTGCGGGGGGTCCGCAGG 27204 30 96.7 31 ...A.......................... CGTCGCTCCTCGGGTCCACTACATACCTGGG 27265 30 100.0 31 .............................. CGCAGTACCGGGTGCCGGAGCCGCCGCCGAG 27326 30 100.0 31 .............................. CCCCCATCTGCCGCAGCCGGGGTACGCCCTG 27387 30 93.3 31 .............G...............C GCGAGGTCGGCGGTCAGGCCCTGTGCGGAGG 27448 30 93.3 31 .................A...........A GGCCGCCGCGGCCGAGCGGAAGGCCCGGTAC 27509 30 100.0 31 .............................. CGTCCGCGAGACCGGCCGTGCCGATCTTGAA 27570 30 96.7 31 ........A..................... AGCCGCTGCGATTCCTCGTCCGCAGCCGAGA 27631 30 96.7 31 .................A............ CCAAGACGCTCGCCAGGGTGACCGCCGTCAG 27692 29 83.3 0 ...........-.TA.............TT | ========== ====== ====== ====== ============================== ================================= ================== 20 30 96.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GTCCACCTCTACCACCACCGCGAGGGCATACGCCCCAGCGACCAGCCCGAGCCGGAGATCAGAGCAGAGATGTCCGAGGCCGGCCGCCTCCGCGGCCGAGCCTTCGAGCGCGTCATGCTCCTGGGCGGCGACGAAGTCGTCGAAGCGGCCCACGACCTCAACGCCATCGCCCTCAAAATCGACTGGCAGGCCACAGGCGAGACCACCGGCACCCTGGAAGACTGGCGCGCCCTCCACCGCGCCACCTTCAAGGCCATCAACGCCTTCCACGAAGCAGCCCGCAAAGACCTCGGCGTTAAGGGCCGCGTCACCGGCGACAGCCACCCGGAGCGAGACCTGCTGCTACCGCCCGCCCGCAGACGAGAGTGACCTATGAAGTGCCTCACTAACCAACCGCCAGCACCACTGAAACCAAAATTCCCACAATGATCGCTTTGCCGGAATCTCAACTAGTAAGTAAAAACTGGCCCCTCCGCCGCTAAACCCGCAGGTGGCGCCCT # Right flank : TGCAAGGACTGCGGCGGAAGCGGGTGGATCGGGTGGCCCCCGCGCACACGGAGCTAGCAGGTTGATCATCGAGACGCCAGCAAGGCTACGGGCCCAGGCGCGGGAGGATGATGCGGTCCGTCTGGACGTCTTCTTCTTTCAGCACAGTCGACGCCTCGCCGCGCCCGTCTCGTTTTCCGTCTCGTTCACCCCCGTCCGCCACCGTTCACAGCTACGTCCGCAGGTACGCGCTCGCATACCCCCGCCCAGGAGATGGACGTGGATGTACCACCCCGGGCGGAGGTGGCAGCGATCGTCCAGACGACAGTGGAGACCTCGAAAGCGTGTGAGGGGGCAACTCCTCCGTGGGTTCAAATCCCACCGCTACCGCTCTTCAGACGAGGGGCCCGACCTGATCCAGGTCGGGCCCCTCGTCGTGCTCCGGCTCGGTTTCCGGCCGTGTCGGGCCGGTGTGCCGGCGGGTGCGGGTGACGGGTCGTCCGGCTTCCGCGCCGGCGGCT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21684-21105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000168.1 Streptomyces sp. SCA2-4 contig168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 21683 30 100.0 31 .............................. TCCCCTCGACGGCGGCCTTGGCCCGGGGGTA 21622 30 96.7 31 .............................T CGCCGAGCGTCGAGCACGGAAAGGCGGCCGT 21561 30 100.0 31 .............................. CTGATCGCCACGGCAGCCCCCTCTCGTATGC 21500 30 96.7 31 .............................T CGCCGAGCGTCGAGCACGGAAAGGCGGCCGT 21439 30 100.0 31 .............................. CTGATCGCCACGGCAGCCCCCTCTCGTATGC 21378 30 100.0 31 .............................. GCAGGCTGAAACGATACGTTCCGCTGCCCCG 21317 30 96.7 31 .............................A GCCCGCCGTCGCCAGCCCGGAGCCGTCCGGC 21256 30 96.7 31 .............................C CTCTTCTCCACTCCTGAACCTGAAGGGGATG 21195 30 96.7 31 .............................A GGACGACCTCGGTGACCACGGTGTGGGGCTC 21134 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 10 30 98.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TCCTTCGGCATGGCAGCCGTCCGCCTGCCGCTGTCGGTCCTCGGGATGCTCCAGTACCTCGCTCCCATCTTCCAGTTCGCCCTCGGCCTCGCGGTCTTCCACGAGTCCATGCCGCCTGAGCGGTGGGCGGGCTTCGCGTTGGTGTGGCTGGCGCTGGCGGTGCTGACGTGGGACGCGCTGCGCTCGGCGCGGGCGACGCGGGTGGAGCTGGCTGCCGCCCGGGAGCGGGCGGCGGCGGAGCCTCCGCGGCCGGAGGCCGCTGTGGAGGCGGCGACCGGCGGCGTAGGCGAGCCGGACACGACGGCGGGCCGCGCCGGGACGTGAACGGCTGTGCGCGCGACGGCGCCTGGCCCTACGATCTGGGCGGACGCTCGAGCGCCGCTCGCGCGCTCAACGCATCGCCCTGGAGGCCGATTTGCCACGGATCAGCCCGAATGCCGGGAGCTGCGAAAGTGAGTAAAAACCGGCCTGCCGCCGGCTAAAGACGCAGGTCGCGCCCT # Right flank : GGGGGGCGGTGTCCAGGAGGGGGTAACGATTGCGGTCCCCGCACGCGGGGGCGCCCGCCCGATATCCGGATACCGAACCCCCCTGTCCGAATTCCGCCCTTGACGGATCTCCGAAAACCCCTTGAACATCATGGGCACGTCAAAAGGACGGGAGCCCCCCATGCTTGATGTCCAAGGTCCCACCCTGCCCACCAGCCCCCGAAGACGCCGCCGGTCCGCCGGGCTGCTGGCGTGTGGGGCGGCTGTGGCGGCGACGCTCGTCGGCGCGTCTCCGGCCATCGCGGCAACAGCGGCAGTACCCACAGCGGCAGCGACCAGAGCGCCACGGGCCGCCGACGCGCCCGAGATACCCTCGGCCGACGTCAAGGCGCACCTCAATCAGTTGCAGTCGATAGCGAATGCCAACGGCGGCAACCGGGCGCACGGTCGCGCCGGGTACAAAGCGTCGATCGACTACGTCAAGGGCAGGCTGGACGCGGCCGGTTACAAGACGACCGTGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36143-37777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000037.1 Streptomyces sp. SCA2-4 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 36143 29 93.1 32 ..GA......................... AGGATGTTCCGCACGCCCCAAGGCCGCCAGCG 36204 29 96.6 32 ..G.......................... GCGGTGATCGCGGCGGTCACGAAAGCGAGGTG 36265 27 82.8 31 ..G..........T........-..-..A TCCGGTACCACTTGTCTGACTTGCCGCACGC 36323 29 93.1 50 ..G.....T.................... CGCGCACGCGGGGGGGCCATCCGGTACCACTTGTCTGACTTGCCGCACGC 36402 29 93.1 72 ..G.....T.................... CGCGCACGCGGGGGGGGCCAACCGGTAGCACTTGTCTGACTTGCCGCACGCGTGGTCCCTGCGCACGCGGGG 36503 29 93.1 32 ..G.........................A TGCTCGGCTCGTATCAGTACCAGCTCCCCGCG 36564 27 86.2 52 ..G...................-..-..A TCCGGTACCACTTGTCTGACGTGCCGCACGCGTGGTCCCTGCGCACGCGGGG 36643 28 86.2 31 ..G...................-..G..A ACCGGTAGCACTTGTCTGACTTGCCGCACGC 36702 29 93.1 50 ..G.....T.................... CGCGCACGCGGGGGGGCCATCCGGTACCACTTGTCTGACTTGCCGCACGC 36781 29 93.1 32 ..G.....T.................... CGCTCCATCACCGTGGCCTTCGGCATCTGCAC 36842 29 93.1 32 ..GA......................... GCCTTCTCGTAGTTCTTCGGGGCGTTGCCGAG 36903 29 86.2 32 ..GA..............C......C... CGGACGGGCGGGCGAGCGGCTAGCAGAGAAAG 36964 29 89.7 31 ..G.........T............C... CGAACGGGCAGTGGGCCTAGCTGCCCGACGC T [36989] 37025 29 93.1 32 ..G......................C... CGGACGGGCGGGCGAGCGGCTAGCACAGAAAG 37086 29 93.1 32 ..G.........T................ CCGAACGGGCAGTGGGCCTAGCTGCCCGACGC 37147 29 93.1 32 ..G.........................G ATGGTGGGCGGGAAGATCGCCTCCGTCTTCAC 37208 29 82.8 89 .......T...A.G..........A...G GAGGCGGGGTCGATGCGCTGGGGTCAGATCGCGACGTCCCCGCACGTGGGTGGTCCGAGATCCCGGCCGAGGCCGCGGCCGTCCACGGC 37326 29 100.0 32 ............................. CTCTCGTCCCGGGTGGAGGTGCTGGAGCAGAT 37387 29 82.8 32 ...........AAG..........A...G GTGGCGGGGTCGATGCGCTGGGTTCAGATCGC 37448 29 75.9 25 ...........A.GT.G.T...A.A.... GGCCGAGGCCGCGGCCGTCCACGGC TCC [37469] Deletion [37502] 37505 29 89.7 32 ..............T..........C..G GTCTTCGAAGCCTGGGACGTGGACGTGGACGG 37566 29 86.2 32 A.G.......................T.G GACGGCGACTACGTCCTGTACCGCGACCCGGC 37627 29 82.8 32 .......T...A.G..........TC... ACGGACGGGGACTTCTTGCGGTCCGCGACCTG 37688 29 96.6 32 .....T....................... AGCCCAGCACGGGACGTTGTCCACGCCCGGCT 37749 29 89.7 0 ..G..................A......G | ========== ====== ====== ====== ============================= ========================================================================================= ================== 25 29 89.8 38 GTCGTCCCCGCGCACGCGGGGGTGGTCCC # Left flank : CAGTGCAGCAGGCTTTGTCATTGCCCCCAGTATGTGCCCGCGAGCCTCCCCCGCGCTGCGCCCGTCCACGTCGGATACGACACAGGCGCCGGACGGACGGCCCGCACCCACCCCGCCACACCCACCCTGACCAGCAAAAAGACCCTCCCATCGGGAGGGTCTCGCCATGCGCCCCCGGCAGGACTCGAACCTGCGGCCAAGCGCTTAGAAGAGGCCAGTGCTGTCCGCTTGGACGTACTGGCTGACCAGGCGGTTTCTCGACACTTCCCCCTCGGGCGGATTGACTCCACCGCGTATCCACCGGAAGGCGACATTCCGCCACCTTGGCTCGCGCGCTGTGATCCGCATGACTTGCTGTGTCGAAGGGGGCCGGGTCGTATAGTCCGGTTGTTCGGAGACGGATGGTCGGTGCATGCCTGTGGCTAGAGAGGTAAATGTCCGATTCCGTGAAAGTGAGTAAAAACCGTGTCCTGCGCTTGCAAACGTGCAGGTCGCGGCCT # Right flank : GCGCCCCGCGAGGAGTACAGCCGCGACAGCCGGGCGTTGTCCAGTGCCACCGAACCTTGACCGTTTGCCAACGAACCTGGACGGGCGCGAGTTAGTGTCAGCGAAGGTTGAGCACTGCAGGACAAGGAGACGCGATGTCCGAGCCCACCCCCGACGATCTGCGATGCCCTCGCTGCGGTGACCTGCCGGAGCCGCTCATCTGCCTCGGCCACAAAGTCGACGGCACACCCGCCACTGACACACCTGCGGCGATGGTCGCACTCGACGCCGAGCTCGGCCTCGCCCGTGACATGCGCCGCCGCGCCGCCGGTGCCGCACTCACCGACGCCCAGACCGCCGCGATGCTGCGTGCCGTGTCCGACGACCCCGGACTGGGCACTGGCCACGGGAAGCACCGGCACTGACCAAGAACAACGTCAAAGGTGCGGCATCCCCCGTCGTTCAACTTCGACGGCCATCGCGCAAGGTTCGATGGCGCAGGACAGTCGTCCCCCGCGCAT # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:-0.04, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.80,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38322-39502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000037.1 Streptomyces sp. SCA2-4 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 38322 28 93.3 31 .....-...........-............ TGTCCGAGGGTGAGCTCCTGGTCGTCGAGGA 38381 30 90.0 31 ......T.......T..............G TCGCGAACACCCGGGTCAAGGAGTGCGACCG 38442 30 83.3 31 ..........T..G...........C..TG ACCCACCCCGGACTCTGCGCCGGATCGAGAA 38503 28 90.0 31 ............--...............G AGGTGTGGTGGACCCACCGCACCGTCGTCGT 38562 30 90.0 31 ...........T..T..............G ACCGCTCCAAATCCAAGCTCGGCAGCAAAAA 38623 30 90.0 31 .............GT..............T CGGGGTTGTCGGTTGCCGCGCCTACCGCCTC 38684 28 83.3 30 ........T...--...........C...A CACGGTCACACGCTTGGCGAACGCGGCGCT 38742 30 93.3 31 .................A...........G TCTTCAACTTGGAGTCCGGCGTCGACCTGAA 38803 30 90.0 30 ......T.....................GG ACGTCAACGGGCGCGGCCTCGGGCAGGTAC 38863 30 76.7 31 ..C........A.GT.T...........GA GCGCGTGGTTGACCATGGAGCCGGCGTCCGA 38924 30 83.3 31 ..C........TGG..............G. GGGTGCCGTCTCCGGCCCCCTCCAGCCACTG 38985 30 90.0 31 ..C.........A................G CCCTGTACGGCGCGGGCCTCAACGCAGTGAA 39046 30 100.0 31 .............................. ATCAGCGACACGGTGGTACGTGAAGTGGAAG 39107 30 100.0 31 .............................. AGCGCCAGCCGAACCGGATGCCGATGGGGTG 39168 29 90.0 33 ..............G..........-..T. CCGGCCACGTGCCCGGTGCGGGCCCTGCGCGCG 39230 29 86.7 32 ........-...G...............GT ATTCGTACAAGGGCACGCCAGATACGATCAAC 39291 30 76.7 30 CAT...................G.A..TG. GGAGCAAGGTCCGACCCCAGGTAGATGATT 39351 30 80.0 31 ..CA.........CT..........C...G AGCCGCTCACGCTGGGCATGCTGGAGAGCGG 39412 30 86.7 30 ..C..........GT..............G GCCGGACCTGCCGTTCTGCCGCGGGCATCT 39472 30 80.0 0 .....TT.........T.A......G..G. | G [39495] ========== ====== ====== ====== ============================== ================================= ================== 20 30 87.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GCCACCGAACCTTGACCGTTTGCCAACGAACCTGGACGGGCGCGAGTTAGTGTCAGCGAAGGTTGAGCACTGCAGGACAAGGAGACGCGATGTCCGAGCCCACCCCCGACGATCTGCGATGCCCTCGCTGCGGTGACCTGCCGGAGCCGCTCATCTGCCTCGGCCACAAAGTCGACGGCACACCCGCCACTGACACACCTGCGGCGATGGTCGCACTCGACGCCGAGCTCGGCCTCGCCCGTGACATGCGCCGCCGCGCCGCCGGTGCCGCACTCACCGACGCCCAGACCGCCGCGATGCTGCGTGCCGTGTCCGACGACCCCGGACTGGGCACTGGCCACGGGAAGCACCGGCACTGACCAAGAACAACGTCAAAGGTGCGGCATCCCCCGTCGTTCAACTTCGACGGCCATCGCGCAAGGTTCGATGGCGCAGGACAGTCGTCCCCCGCGCATGCGGGGACACTTAGGTACGAGCACAGCTTTAGTGATCGGAACCAC # Right flank : CTGCGGGGCCCGCCTCAGTGGGAGGAGACATGTGCGCGACACGGACAACGGTCACTTCGGGTACCACCAGATCGCGGACGAGCTGAGATCTCGGATTCGTAGTGGGGCCTTTGGGCCCGGTTCTGTGCTTCCGTCTGAATCGGCGCTTGCCGAGGAGTTCTCCGTGGCGCGCGGTACCGCACGACGGGCAGTTGAGGCCTTGGAGAAGGACGGCCTTGTCACGACGGTCCGAGGTCGGGGTCGGTTCATCGCGGGCGAGGGGGTGCCGGCCATCGCGAAGCACAAGCGTGTGGCGGACATCCTCCGTCAGCGCCTCGCTGACGGGAAGCTGAGGCCCGGTGATTCGCTTCCCTCGGAGTCGGAGCTGTGCGCCGAGTTCGACGTGTCCCGGTCGACGGCGCGGCAGGCCTTTGCCGAGCTGGAGCGGGCGGGGCTGGCGCGAGCCGAGAAGGGCAGTGGACGGGTCGTCACCGTGCCGCCTGATTTTGACGACGACGGTA # Questionable array : NO Score: 4.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2111-1430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000106.1 Streptomyces sp. SCA2-4 contig106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2110 30 100.0 31 .............................. GGCTGATCAGCATGCTGCGGCCGTGGTCGGC 2049 30 100.0 31 .............................. CCTCAACCGCACCCGCTACAGCCCCGGCTGG 1988 30 100.0 31 .............................. CGGACCTGTTGCTGGGGGTGGGGGAGGTCGT 1926 29 96.7 0 .............................- - Deletion [1898] 1898 22 70.0 31 --------.....T................ CTACGAGCACGTGCCCGTCGGAGGAGACGAC 1844 29 96.7 0 .............................- - Deletion [1816] 1816 22 70.0 31 --------.....T................ CTACGAGCACGTGCCCGTCGGAGGAGACGAC 1763 30 100.0 31 .............................. CTTCGAGCACGTGCCCGTCGGAGGAGAAGAC 1702 30 96.7 31 .............................C GCGCTACGAGGCCGTCGACTTCGTCCAGATC 1641 30 96.7 31 ..................A........... TCGGCGCGGCGTGCCGCCGACTCGGGATCCC 1580 30 96.7 31 .............................A GCACGTCGTAGGGGACGGGCTTGCGTGGGGC 1519 30 96.7 31 .............................T ACATCGAATCCGTGGGCGGAAAGTATCTCTC 1458 29 90.0 0 .....................-......GC | ========== ====== ====== ====== ============================== =============================== ================== 13 30 93.1 26 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCGCCACGATGTTGGCCCTGCACGCGGCCCGACAGGGCGACGTGCACTCCACCCTCGTCCCGGACACCGAAATCATCCGCGCCTGGCGTAAGTTGTGGGACGACCACCGCCTCGCCGTGGAACACGCCGGCGCCACGGCACTGGCGGCGCTCCTGGCCGGGAAAGCGGACTCCGCCGCTTACGGCTACCGGCCGGGCGAGGGCGAGAAGGTGTGCGTAGTCCTGTGCGGCGCCAACACGGATCCGGCTACGCTCGGGGCCTCCGCGAACTGACCACTACCGAGGGGGTTCAACCAACTGACTTAGCAGGTGGTCACCGTGCTGTTTGGGGTACCTACCGCGTGACTTAAGTTGTGTCAGAGGAGAGGTGAGGGTGGCGGCGGCATGGCCGACTGCAACCACACCCGAGAGGTTGATATGTGCAGCAAATTCGCTTTGCCCGTTTCCGTGAAAGTGAGTAAAAACGCGGCTCCCCGCGCATAAACCCGCAGGTCGCGCCCT # Right flank : CACCCACGGGCCTCAATCGGCTCAGCAACGGCCAGACCGTCCGCCCAGAACCGCAGCGGCGCCAAGCGCCGCAGCCTCACCCCACCCTCCGAGCCGCCCGATTCCTCCCCCCAGTCCCAGGCGAAAGCGCCACCGCCAGCTCATCCAGCGCATCCGTCAAAAGCTCAGCCCCCCGCACGGTCACCCCCGTATCCCCCTCCTCCGCAGCCCAAGCCGCCACCCGCACCCGCAGCTCCGTCCAGTCCAGCGGCCGCCGTTCACGGACAGCGGCGACCGCGTCCGGTAGCAGCTTCCGCAACGTGTCCGCGAAGGCCGCCGCGCCAGGCGAAGCGGGCGCGTCAGCCTCAGGCAGATGCGCCTCCATGAGCATCGTCACGCGCCCCATCGTCGCCAGCGCCGACTCCGCCGCGCGTTCGGCGCTCCTCGAGAGACCCCGGTGGCGGACCGGTTCCTTCTGGGCGCGTTCGGCGGTGTCCTCCCACTCGCGGCGGGCCGCGCGT # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.48, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12399-11639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQLH010000106.1 Streptomyces sp. SCA2-4 contig106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12398 29 96.6 32 ............T................ CCTGTCGAGGGTGGAACGGAACGTTTCCAGGT 12337 29 93.1 32 ............T............C... GCCAGCATCGTGGCCCAGGCCCCGGTGGATGG 12276 29 93.1 32 ............T......A......... CAGGTGCGGCTGTCGTGGAGCGTGCCGGTGGG 12215 29 96.6 32 ............T................ GCCTCCGTGGTCGGCGACGCGAACGTCTGGAC 12154 29 93.1 32 ............T........A....... CTCGGCTACGACCTGGCGGTCATCGCCCGGGA 12093 29 100.0 32 ............................. GCTCGGTACGACCTGACGGTGATGGACCGCGA GGG [12069] 12029 29 89.7 32 ..............A.........A...T TTCCTGATGCCGGTCCTGGTACCGGCGTTGCA 11968 29 100.0 32 ............................. GCTCGGTACGACCTGACGGTGATGGACCGCGA GGG [11944] 11904 29 89.7 32 ..............A.........A...T TTCCTGATGCCGGTCCTGGTACCGGCGTTGCA 11843 29 100.0 32 ............................. CGCTGCTGGCTGGTGAGCAGCTGCGCGACGCG 11782 28 86.2 27 ...G.........A.......-.....T. TTGCCGATCGCCGCGCTCAGGGTGTCC 11727 28 79.3 32 .CAG.......C..-..........C... AACTTCACCGCGTTCTACGCCCGCAAGCTCGC 11667 29 72.4 0 .C.G.......A.AG......A...C..G | ========== ====== ====== ====== ============================= ================================ ================== 13 29 91.5 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CACGACCAGCAGCGCCATCAACGCCCGCCGACGCGGCAGCCGCAGCATGGCGACGGTAACGACCGGCCCGGCCACGGTGACCACCAGCGCGTACCCGGTAACGAGCCCCCCGACAGCCGGAATCGGCTGCTTCAGGTCGGCGGCGAGCTCGGGCAGCAGCCCGACCATGACCCACTCCCCGGTCCCGACGAGAAACACGCAGGCGGTGAGCACGGCGAGGGCGACAGCCGGGGACCCGGGGGAGGGCGGAGGTGTCTGCGCTATTTGCGCTACGGAAGTTGGGCGACGGACCGCCCCCGTGGGAGTGCTTGGGGCCATGCGGCGACGCTATGGTCTGACATCGATGTGAGAGTCAAGCGCGGGCGGGAGGGGCGTGAGTGACGACGAGGGCTTCGCCGGCTCACCGAGTCTGGGAGCCGCCCGATATGACGGCTTCGCCGGACTCTCGACAAGTGAGTAAAAACCCGGCCCGGCGGAGACAAATCCCCAGGTGGCGGCCT # Right flank : GCGAGCGCATCGAGGTCAAGCTCCGCTTCCAGCCAGCCCTGCGCCCGCAGGGGCGGCAGCGGGGTGGGCGCCGCCGCCCACTCCCCCGAACCCGGTGGGCAGGCAGCGGCGCCAAGTGGCCGCGAGCTCGTGCCCGCAGCCTCGTTCGGCTACTTCGCCGCCGAGTCGACCGCGCTGGAGGCGCCGGAAAGGGCGGACTGGGCGGTGGAGTTGACCGTGTCCTTCGCGGCGGTCACCGGGCCCGGCTCGGAGGCGGGGGCGGAGGCGCTGGAGGGGGGCGGCGGCTGCTCCTCCGAGGACGAGGAGCCGGAGGCCTTCGCGTCGTACTGGTACGTGGTGGTGACCTTGCGCTCCTTGGTGATCTTGCCCGGAGCCGGGGAGACGATCGCCACGGGCAGCGCGCCCAGGTCGACACCGCCGCGGTGGCGGCCGTGGTGGTCGTCGGCCATGGCCGTACCGGCCTGGCCCAGCACCATGCCGCCGGCCAGCAGGGCCAGCGC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGCTCCCCGCGTGTGCGGGGGTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //