Array 1 575-1982 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTJ01000032.1 Pseudomonas aeruginosa strain LiA145_2005 IPC780_32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 575 28 100.0 32 ............................ AATGGCAAGTCAACGAGCCAGGAATTCTCGTT 635 28 100.0 32 ............................ ACGAATAGTGACGGAATGAGCATGGAACTGGA 695 28 100.0 32 ............................ AGCGACCATTTGCCAAAGCTCTGGCTCCGCTT 755 28 100.0 32 ............................ AGAAGCGGTTGGCAGGTACTGGCTTCAAGCTA 815 28 100.0 32 ............................ TTGAGACTCCTTTTAGCTTGAAGCCAGTACCT 875 28 100.0 32 ............................ AGCTATTCATTGCGCCGCCTCCATTTCTTCAT 935 28 100.0 32 ............................ TTGAAGTGTGGGAGTTGTGCTTCTTATATAAT 995 28 100.0 32 ............................ ATGTGTGCGAGCAGTTTTGGCATCAACCACTA 1055 28 100.0 32 ............................ AACCGCTTCTGGCCAGTGCTCTGGGTATTTTT 1115 28 100.0 32 ............................ AGCTTCAGCAGAAGAGGCAAATACTCCTCAGC 1175 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 1235 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 1295 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 1355 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 1415 28 100.0 32 ............................ TGATGCCCGACATGGGTCGGTTCGCGGGAACC 1475 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 1535 28 100.0 32 ............................ GCTGACCTGCCCTCATTGCCAGGGCACCGTGG 1595 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 1655 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 1715 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 1775 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1835 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1895 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1955 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11665-10497 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTJ01000032.1 Pseudomonas aeruginosa strain LiA145_2005 IPC780_32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 11664 28 100.0 32 ............................ TAGAGCAATTGCCAGCGACCATTTGCCAAAGC 11604 28 100.0 32 ............................ ATAGCACAGAAAGGCACGGAATTAGGCGTCGA 11544 28 100.0 32 ............................ TTGGTGCAGATATTTTTTTGCCTCTACTTCAT 11484 28 100.0 32 ............................ TACAGAAGTCATCCAACACGTGTCGAAAATGT 11424 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 11364 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 11304 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 11244 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 11184 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 11124 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 11064 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 11004 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 10944 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 10884 28 100.0 92 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTTGTTCACTGCCGTYTAGGCAGCTAAGAAATCGACGAAGCCGAGACGTTCACCAGCMCCCAT 10764 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 10704 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 10644 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 10584 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 10524 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 19 28 98.3 35 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16729-18316 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTJ01000041.1 Pseudomonas aeruginosa strain LiA145_2005 IPC780_41.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16729 28 100.0 32 ............................ TGAACGCGATTCGGGAAATCGACATTGAACAT 16789 28 100.0 32 ............................ AACACGGATAACGTTAAGCGGATTCAATTTCA 16849 28 100.0 32 ............................ ATGAATACATTCGCCAAAAACATGGAGGCTAT 16909 28 100.0 32 ............................ CTCTCGCGATATTCATTAATCCTCTTCGGGAG 16969 28 100.0 32 ............................ TAGGCCTTTTGAGAACTCATTTGCCATAGCAA 17029 28 100.0 32 ............................ TCTTCGGGAGTGTATAAAGGTACTCAAACAGA 17089 28 100.0 32 ............................ TCATTCATTTTGATGGGCTTGAGTGGCGGTAA 17149 28 100.0 32 ............................ AAGCCCTCCCCCTGGAGCAGCCGAAGCGCGGG 17209 28 100.0 32 ............................ GTGATGGTGCCCATGCGGCGCATGTGCATCAG 17269 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 17329 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 17389 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 17449 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 17509 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 17569 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 17629 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 17689 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 17749 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 17809 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 17869 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 17929 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 17989 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 18049 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 18109 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 18169 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 18229 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 18289 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTRGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //