Array 1 241039-242559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNNG01000112.1 Escherichia coli 2-052-05_S4_C1 e205205S4C1.contig.112_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 241039 28 100.0 33 ............................ AGGAAGATATCGATTTGATTATTGGAAAAAGTT 241100 28 100.0 32 ............................ TCAGAAATCGGGACAGGATGTGGGAATGTCGG 241160 28 100.0 32 ............................ AAACTGAGGAACAATTCCGGTTTTATAGTCAC 241220 28 100.0 32 ............................ GAGTTTCGAATGATATGACAAATCTAAATAAG 241280 28 100.0 32 ............................ TGGGATATTCCGGCGACCTGGTACGGGGATGT 241340 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 241400 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 241460 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 241520 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 241580 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 241640 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 241700 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAACGCTCATT 241760 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 241821 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 241881 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 241941 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 242001 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 242062 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 242122 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 242182 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 242242 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 242302 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 242362 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 242422 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 242482 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [242530] 242530 28 78.6 0 CC..................A...C.CT | T,C [242548,242552] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 251619-253028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNNG01000112.1 Escherichia coli 2-052-05_S4_C1 e205205S4C1.contig.112_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 251619 28 100.0 32 ............................ AAAAGGGATAATGTGATTACTTATTTCAACGT 251679 28 100.0 32 ............................ TGGAAGGTACGCGCTGTTTTATTTCATTATTT 251739 28 100.0 32 ............................ AACGTAGTGAGCGAGTGGGCGAGGAAGCGGAA 251799 28 100.0 32 ............................ TCGAGGTACTCCTTATCCTTCGGCCGCTTTCC 251859 28 100.0 32 ............................ GCGCACGCTCGCTCAGACATTCCCCACCTGGT 251919 28 100.0 32 ............................ CGAAGCGCGGCGCAGCCGCTGACGAACGTACC 251979 28 100.0 32 ............................ TGAACGCTATCATCTTCATAAGTCACCCCAAC 252039 28 100.0 32 ............................ AGCAGCCCCAATCCCTAAAAGAGCCATTCCCT 252099 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 252159 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 252219 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 252279 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 252339 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 252400 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 252460 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 252520 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 252580 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 252640 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 252700 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 252761 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 252821 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 252881 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 252941 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 253001 27 92.9 0 .......................-C... | T [253021] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //