Array 1 150112-150478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048271.1 Lactobacillus panisapium strain ESL0409 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 150112 36 100.0 30 .................................... CCTCTTTCATAATTACTAATAGCTTGATGA 150178 36 100.0 30 .................................... TCAATGTTATCCATTACAATTTTATCGCTA 150244 36 100.0 31 .................................... CACATTTTTGCGAAAACATTGTTCAGTTTTG 150311 36 100.0 30 .................................... CGCTGAATTAAAAAACAAGCAAAAAGATGT 150377 36 94.4 30 .................G..A............... AGAGTAGTTGGCTATCATGGCTCTGACTAT 150443 36 91.7 0 .................G.........A.......T | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 97.7 30 GTTTTAGATGGTTGTTAAATCAGTGATGACTAGAAC # Left flank : GTATAACTGGCAGTGAAAATTGTTTAAGCGGTTAAATTTGGCAAATAAAACTGATTGCGTAGCAATTGCTGCATGGAACTACTTCATGCTTTTATTTGAAAGAGCTTTTGACATGGTAGAAGTTTCTTTAAAAGGGTATTAATAGCCTGGATAAAGTCGCACAGAATAAGATATTATGCGTTTTTAGCAGCATTATTTGATGGCAGATTTACCGCTGGCAATTAGCTTTGATGAAGACTAGAAAAAGCTATTCAAAGGGCTGATTTGTATCTAGCTGAGAATATATTGAGTGAATCATATGCTATAATTGAAACAGTTCTATAGATTCATCAAAACTGTAACTTGAAAACAGTTATTTTGATAAGCAGGAATTAGTACTAATTGAATTCACATCTTCGGATTTTTTGGTTGTTCCCGGGGATACCTATTTTTATAACGTTATTGAAGGTTTAGTCGACTGGTATTAACTGCTACATTAAAATTTGATGATAAAACATCGG # Right flank : TAAAATAGCCGTAATAAAAATTGAATTAAGTTAACTTCAGCATCTAGCTTTTTATGCCAAATATGGACGTAAAATTTTAGAAAGTGGCGAATTCACACTCTTTAGTAGTAATTCAATGGGGTGTTCAACCCATTACTTGCTTAATTATTTAGTTAATTTTGCTAGTTTTACCCAAAACAAAAGCCCTATTAAATAACGGTTTATTTAATAAGGCTTTTTAATTTTTAAGATTTTTGCTTGTTAATCAAGTTCCGAGCCAAAAGGTGTTAGCTTGTCAGATGATTTGAATCTAGTTGATTTCGATATCACCGCTTTTACTGATTATTTTGAGTAAAGGAGCACCGTGATAGATTTTCTTATAATGCTTTCGCTGCTCACGGCCCTTAACTTCGATATCACTGTCGGAAGTAGTTGATAAATCATAACTGATGTTAGTCATCTGATATGATTCAAAATCACCGTCGTTTAATTTAAAGGTGCTATTTCCAAGCAGTTTTGAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAGTGATGACTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 354448-356661 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048271.1 Lactobacillus panisapium strain ESL0409 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 354448 36 100.0 30 .................................... TTGACGCCGAGAAGTCACTGTATAGGTCTT 354514 36 100.0 30 .................................... GAAAAACAGTTAAATGTGTGGTCTGTGGAA 354580 36 100.0 30 .................................... CGGGAACTGGTTATTTTGGTAGTCAAAGAC 354646 36 100.0 30 .................................... TTTTGGCACTGCTAAAAAAGGGGCAACGAC 354712 36 100.0 30 .................................... AAAAGTATTTGAAACTTACCCAAATTTCTT 354778 36 100.0 30 .................................... CAGCAACAGCTGGGTTGTGCTGTCTTGCAT 354844 36 100.0 30 .................................... AGTAATAGACTTTACCAAAATTGAAGATAA 354910 36 100.0 30 .................................... ATACGCTTGGTCTTTTGTTAAGGGACTTAG 354976 36 100.0 30 .................................... AATGACCATCGAAAGTAACCCAATTGTCTC 355042 36 100.0 30 .................................... ACAGATCAAGCCAAAATAGATAAATTATTG 355108 36 100.0 30 .................................... CGCGAAGTACAGGTTGCGATTAATCATTCC 355174 36 100.0 30 .................................... AGATAGTTAAAGGATAAGAGAATTAAGAAA 355240 36 100.0 30 .................................... AATAAAGTTGCGATTAAAATTGAGCACTAT 355306 36 100.0 30 .................................... TAATGTGGTGGTTTCATTTTTATCTGCTCC 355372 36 100.0 30 .................................... GATAATTTCAAGAAAAGCGTAAGCAAGACT 355438 36 100.0 30 .................................... TAATGTGGTGGTTTCATTTTTATCTGCTCC 355504 36 100.0 30 .................................... GATAATTTCAAGAAAAGCGTAAGCAAGACT 355570 36 100.0 30 .................................... TTAATAACGTATCTATGATAGAATAGGTAA 355636 36 100.0 30 .................................... ATGCCGTTATTAAGGGTGACGATATTAACG 355702 36 100.0 30 .................................... ATGCAAAAGAGCCGTTTGAAGACATGGCTG 355768 36 100.0 30 .................................... ATGCCGTTATTAAGGGTGACGATATTAACG 355834 36 100.0 30 .................................... ATGCAAAAGAGCCGTTTGAAGACATGGCTG 355900 36 100.0 30 .................................... GCAACAATAAAAGGGCGATCATTGTTAAGC 355966 36 100.0 30 .................................... GTGTTTATTGGCTTTAAATTATTAACTTTA 356032 36 100.0 30 .................................... AATTGCTTGAGTTTGTAAATGACAACTCGA 356098 36 100.0 30 .................................... AAGTATCTTCTTATAAAACACCTACAGCTA 356164 36 100.0 30 .................................... GCAACATAGTTGGCTAGTGTTGTGTAACCT 356230 36 100.0 30 .................................... GCGAAAACATCCCTGTCAACTCTACACTAG 356296 36 100.0 30 .................................... CTGTAGAGCTTACCACTAAACAAAGAGAAT 356362 36 100.0 30 .................................... ATTCTGATTGGAGAAAAAGTCTTACTGAAC 356428 36 100.0 30 .................................... TCTTCTGGGCAATTAGGCGTATTGGTGTAC 356494 36 100.0 30 .................................... ACTTAGAACAAAACAACGGCTTAGATTATG 356560 36 100.0 30 .................................... ATCTGATTGTGATCCTTCTTCAATCGTTTC 356626 36 88.9 0 ..................G......T........GT | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.7 30 GTTTTAGATGGTTGTTAGATCAGTGATGACTAGAAC # Left flank : AGTAGCGATATTACTAAAAAATACTTAACCAAAATTGTTAGTACTTATATTACTAACTTAGACGAAGCCACGCGTAATAAGATAATCTGTGCTTTTAGCAATTTAGAATTAGCATTATCTGATTCACTGCTTCTTGAAGATTTACCGTTAGCAATTAACTTTGAAGAAGATTTAAAAAAGCTACTCAAAATGGCAGATTTGCATCTAGATGAGAACATATTGAACGAACCATATGCTATAATTGAAACAGTTCTAAAAATTCACCAAAACTGTAATTTAAAAACAGTTCCTGTGTTTTGTAATACTACAAATTATTTAGATAATCGGGAATTAGCCGAATTAGCACAGATTGCAAAGCAAATGAAGTTAATGGTCGTTCTAATTGAATTCACATCTTCGGATTTTTTGGTTGTTCCCGAGGATGCGCAATTTTATTACATTGACGAGGATTTAGTCGACTGGTACTAACTACTACATTAAAATTTGATGATAAAACATCG # Right flank : TTAAAAATTCATCTATCAATAAAGTTTGTTTTAACTTACCTTTATTGTCGAGTCTGAGCCGGTGGCTTTTTATGACAATTTTGGACGCACAATTTTAGAAAGTAGCAAGTTCACGCCCTCTTTATTGGCGGTAATTTCAGAGATTGTTTGCCCCAGAGTTTTACGCCACCTGCTTGCTTATGTGAATTAGCTAATTTTGTTCAACAAAAAAAGCACATCGTTTGTGATGTGCTTTTTTAGTGCATTCACATATAACTAGCTGTGAGCTGTTTTTACCCATGAATCATTCCCTTTTAATTGGCGAATTATGGCGCGATAGGGGATAAAGGCTAGCACCCAGCGATAAAAGGCAAAGCTAAAGATTATTCTAAAAATCTTTAAGCGATTTTTAGGTGGCTCTAAATTCGATTCGTGCCACTGCTTTTCAATCATTAACGTATTGACCAGGTTTTCTGTGAATAATAATGTGAAAATAATTGCTAAACCAATTAATGGCCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAGTGATGACTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //